Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5634 149 6e-31 seq5320 109 5e-19 >seq5634 Length=4821945 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||| || |||| ||||| |||||||| |||||||| || Sbjct 1938705 CCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCGAG 1938764 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||| || | ||||||||||||| |||||| ||||||||| || ||||| Sbjct 1938765 AGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGA 1938824 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || ||||| | ||| | |||||| | || || || Sbjct 1938825 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 1938884 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || || ||||| | ||||| ||||| |||||||| Sbjct 1938885 TCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938931 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||| | ||||| || || ||||| || |||||||| || Sbjct 1938933 CCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAG 1938992 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || |||||| | |||||||||||| |||||| ||||||||| || ||||| Sbjct 1938993 AGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 1939052 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || ||||| | ||| | |||||| | | || || Sbjct 1939053 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACT 1939112 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || | ||||| || || |||||||| Sbjct 1939113 TCAAGGGTGATAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 1939159 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| ||||| ||| | |||| |||||| || || || ||||| || || Sbjct 1939388 GCCTCCACGTAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAGA 1939447 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || || || || ||||| |||||| |||||| |||||||||||| ||||| Sbjct 1939448 AAGAGTTCTGCCATCCTCTAGTTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGG 1939507 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| |||||| ||| | | || | ||||| | | ||||| Sbjct 1939508 AATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTCTCGATAGTGTCAGAAGCTTCCAC 1939567 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | || || || || | |||||||| || |||||||| Sbjct 1939568 CTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 1939615 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 || ||||||||||| | || || |||||||| ||||| ||||| | || || Sbjct 1938261 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCA 1938320 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || ||||| || || | |||||||| || ||||| || || || ||||||||| Sbjct 1938321 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTG 1938380 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | ||| | || || | | || || || | || | | Sbjct 1938381 TCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCGACTTCGAGAGTAATC 1938440 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || ||||| | ||||| ||||| |||||||| Sbjct 1938441 GTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938475 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| ||||||| || || ||||||||||| || ||||| Sbjct 1939161 CCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAG 1939220 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || || || |||||| | |||||||| |||||||| || || Sbjct 1939221 AGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGA 1939280 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || ||||| || ||| |||| | |||| | ||| | ||||| | | || || Sbjct 1939281 ATTCCCTCTTTATC-TTGAATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGAC 1939339 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | || ||||| || || ||||| Sbjct 1939340 TTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 >seq5320 Length=807335 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | | |||||| || || | ||| || |||||||||||||| || || Sbjct 502561 CCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAA 502502 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| |||||||||||||| || || |||||| | |||||||| || || Sbjct 502501 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 502442 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | |||| | | || | ||||| | | ||| || Sbjct 502441 ATTCCTTCCTTGTC-TTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAAC 502383 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || || ||||| ||||| ||||||||| Sbjct 502382 TTCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCATA 502334 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||| | ||| || || | ||| || ||||| ||||| || || || Sbjct 502105 CCACCACGTAAACGGAGAACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGAA 502046 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| |||||||||||||| || || |||||| | |||||||| || || Sbjct 502045 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 501986 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | |||| | | || | ||||| | | ||| || Sbjct 501985 ATTCCTTCCTTGTC-TTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAAC 501927 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || ||||| || || ||||| ||||||||| Sbjct 501926 TTCCAGCGTGATTGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCATA 501878 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||| | ||| || || | || || ||||| ||||| || || || Sbjct 501877 CCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAA 501818 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| || ||||| ||||| |||||| | |||||||| || || Sbjct 501817 AGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGA 501758 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | || | | || | ||||||| | ||| || Sbjct 501757 ATTCCTTCTTTGTC-TTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCAAC 501699 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || |||| ||||| ||||| |||||||| Sbjct 501698 TTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATTTGCAT 501651 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| || || | ||||| || |||||||| || || || Sbjct 502333 CCACCACGTAGACGAAGAACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAA 502274 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| || ||||| ||||| |||||| | |||||||| || || Sbjct 502273 AGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGA 502214 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | || | | ||| | ||||| | | ||| || Sbjct 502213 ATTCCTTCTTTGTC-TTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAAC 502155 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || || ||||| || || ||||||||| Sbjct 502154 TTCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACAAAAATTTGCATA 502106 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| ||||||||||| ||||| ||||| ||| | || | || | ||||| ||||| Sbjct 503221 TGAAGTGTAGACTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCA-TCTTCTAGCTG 503163 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || | ||||| | ||| ||||||||||| ||||||||||| || ||| ||| Sbjct 503162 CTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATC-TTGAATTT 503104 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | |||| | ||| | ||||| | | ||| ||||| | || | || || || | Sbjct 503103 TCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGACCTCCAGCGTAATAGTTTTACCAG 503044 Query 139740 TCAACGTTTTTACGAATATTTGCATA 139765 | | ||||| || || || |||||| Sbjct 503043 TGAGAGTTTTGACAAAAATCTGCATA 503018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496027812131200