Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5665 123 4e-23 seq5738 100 4e-16 >seq5665 Length=3828390 Score = 123 bits (136), Expect = 4e-23 Identities = 223/323 (69%), Gaps = 5/323 (2%) Strand=Plus/Plus Query 78954 AAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 ||||| | || | |||| |||||| || || | ||| ||||| || ||||| | Sbjct 3267786 AAGGTGTTTACT-TGAACAGATCCAAAATTCGCGAGTATCTCGTTCTTCATATCTTCGTC 3267844 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||||| ||| ||||||| ||| | | ||||||||| || | ||||||||| Sbjct 3267845 CCATAGACCTCTACTGGTTAAATCTCGCAATAAATGCGGATTGACAATGATAAATTCTCC 3267904 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 ||||||||| | || || ||||| || ||||| ||||| | ||||| ||||| || Sbjct 3267905 AGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCAATGGATTCGTTATTCCC 3267964 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 |||||||| || || || ||||||||||||||||| | || | |||||| | || Sbjct 3267965 TAAAATTTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGCGAATTTCTTACTCC 3268024 Query 79194 GTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACA 79251 | || | | || || | || | ||||||||||| | || | ||| ||| Sbjct 3268025 G--TGCTTCGCAATCTTCGCCTTCAATTTATCCCAATCCCATAAATTTGTCGGTTTAACG 3268082 Query 79252 TTCCAAAGATCATATTGTAGAAT 79274 ||||| | ||||||||| ||||| Sbjct 3268083 TTCCACATATCATATTGGAGAAT 3268105 Score = 98.7 bits (108), Expect = 1e-15 Identities = 186/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 80306 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 |||| | || ||||| || || | |||| | ||||| |||| || || ||||| | Sbjct 3269556 GAAATTACCTGGACATCTGTTGGTTATTAGTACAGGCATTGAATAGAGTTGGTGAAGCAT 3269615 Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425 | ||||| || ||| |||| ||| || || || || || || || || || Sbjct 3269616 GTGTAAAATATCGTTCGGACAAATAATTATATGTTTCTATGACTTTATCAATCTCATTTT 3269675 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485 |||||| || || || || | ||| ||||| || ||||| || || || ||||| || Sbjct 3269676 CATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCAT 3269735 Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 80545 | ||||||| || ||| | | || | ||||||||||||| ||| || || ||| | Sbjct 3269736 TGATTTTCAGCAGATAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTAAAAT 3269795 Query 80546 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 80579 | || ||||| || ||| | || | ||||| || Sbjct 3269796 CACGATCGTATATTATAGCAGAATCCAGTTTCTC 3269829 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| ||||||||||||||||||||| || || ||| | ||||| || ||||| | Sbjct 3270040 CACTAAAACTTTTTTTTGTTTCCTTGTGTAGGTTGGACACGTCAATTCTTGCAGCTAATA 3270099 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | |||||||| ||||||| || | || || || |||| ||||||||| | || | Sbjct 3270100 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAA 3270159 Query 80798 ATTCTACCGTTGTTACTCCATTATATA 80824 | || || ||||||||| ||||| Sbjct 3270160 GTATGACTGTAGTTACTCCAGAATATA 3270186 >seq5738 Length=4927432 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| | ||| ||||| | |||||||||||| |||| || ||||| || ||||| Sbjct 2905061 CACTAAAAACTTTCTTTGTCTGCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 2905002 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | ||||||||||||||||| || | | | ||||| |||| ||||||| | |||| Sbjct 2905001 TTGCATAATCTGGATGTTGATTAATCATAATCGCTGCAGTTTCAGCTGCCAAGTTATCCA 2904942 Query 80798 ATTCTACCGTTGTTACTCCA 80817 |||| ||||| |||||| Sbjct 2904941 ATTCGCTTGTTGTCACTCCA 2904922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718216402291040