Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5634 107 1e-18 seq5320 107 1e-18 seq4085 84.2 2e-11 >seq5634 Length=4821945 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || || || | |||||||||||| | || | | || |||| |||||||||||| ||| Sbjct 1938513 TCTTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAA 1938572 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| ||||||||||| | || | |||||||| || ||| | || || | Sbjct 1938573 ATCAAACGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGGATTTTGGCCTTTACGTTT 1938632 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||| ||| ||||| || | || || ||||| ||||| ||||||||||| Sbjct 1938633 TCAATGGTGTCTGAAGCTTCGACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACG 1938692 Query 43099 AAAATTTGCATT 43110 || ||||||||| Sbjct 1938693 AAGATTTGCATT 1938704 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||| ||| || || |||| ||| || ||||| | |||||||| || Sbjct 1938249 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 1938308 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||| |||||||||||| ||||||| ||||||||||| | || Sbjct 1938309 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 1938368 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | | | || || ||| ||||| Sbjct 1938369 ATTCCTTCTTTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCGACT 1938428 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| ||||| ||||||||||| || ||||||||| Sbjct 1938429 TCGAGAGTAATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938476 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 42953 CGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTT 43012 |||| ||||| ||||| || || || ||||| || || || || | || | ||||||| Sbjct 1939003 CGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTT 1939062 Query 43013 TTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTA 43072 | || |||| |||| || | | | |||||| ||| || || || | || | Sbjct 1939063 TGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGGGTGA 1939122 Query 43073 TAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||||| || || |||||||||||||| ||||||||| Sbjct 1939123 TAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCATT 1939160 >seq5320 Length=807335 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| ||| | |||||||| | ||| ||||| || | ||||||||| ||| Sbjct 501421 CCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAGAC 501362 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || |||| || || || ||||| ||||| ||||| ||||| | || Sbjct 501361 AAGGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGA 501302 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || | | | ||||| |||||| || Sbjct 501301 ATGCCTTCCTTATCCTGGATCTTTGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAACT 501242 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| || || || || | || ||||||||||| ||||| Sbjct 501241 TCAAGAGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 501195 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | || |||||||| | |||||| || || Sbjct 502333 CCACCACGTAGACGAAGAACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAA 502274 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || || | |||||| || || || ||||||| ||| ||||| | || Sbjct 502273 AGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGA 502214 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || || | ||||| | | | ||||| ||||| || Sbjct 502213 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAACT 502154 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || || ||||| |||| ||||| |||||||||||||| Sbjct 502153 TCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || || || |||||||| | ||| ||||| || | ||||||||| || Sbjct 503017 CCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCAGAA 502958 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || || | |||||| ||||| || ||||| | ||| ||||| | || Sbjct 502957 AGTGTACGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGT 502898 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | |||| || | | | ||||| ||||| || Sbjct 502897 ATTCCTTCCTTGTC-CTGAATTTTGGCTTTAACATTCTCGATCGTGTCCGACGCCTCAAC 502839 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || || ||||| || | || || || ||||||||||| Sbjct 502838 TTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 502791 >seq4085 Length=6844556 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 42896 TTAACACCAAATGGATAGTGCTCTCCTTTT-GCACATTGTAATCGGACAATGTACGTTCG 42954 |||||| || || ||| | | | |||||| | | |||||||| ||||| || ||| | Sbjct 2742622 TTAACATCAGATACATATT-CGCACCTTTTTGGATGTTGTAATCAGACAAAGTGCGTCCA 2742680 Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || |||| ||||||||||| || || | |||||||||||| | || | || || || Sbjct 2742681 TCCTCCAGCTGTTTGCCGGCGAAGATGAGTCGCTGTTGATCTGGTGGAATTCCCTCCTTG 2742740 Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATA 43074 || |||| | ||||| | | | || || ||||| || || | || ||| Sbjct 2742741 TCCTGGATCTTAGCCTTGACATTCTCGATGGTATCAGAGGCCTCTACCTCGAGGGTAATA 2742800 Query 43075 GTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || || |||||||| || || ||||| Sbjct 2742801 GTTTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 2742835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381342474610488