Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5665 98.7 1e-15 seq5738 95.1 2e-14 seq4511 89.7 7e-13 >seq5665 Length=3828390 Score = 98.7 bits (108), Expect = 1e-15 Identities = 186/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 72389 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 |||| | || ||||| || || | |||| | ||||| |||| || || ||||| | Sbjct 3269556 GAAATTACCTGGACATCTGTTGGTTATTAGTACAGGCATTGAATAGAGTTGGTGAAGCAT 3269615 Query 72449 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508 | ||||| || ||| |||| ||| || || || || || || || || || Sbjct 3269616 GTGTAAAATATCGTTCGGACAAATAATTATATGTTTCTATGACTTTATCAATCTCATTTT 3269675 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 ||| || || || || || | ||| |||||||| ||||| || || || ||||| || Sbjct 3269676 CATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCAT 3269735 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | ||||||| || || | | || | ||||||||||||| ||| || || ||| | Sbjct 3269736 TGATTTTCAGCAGATAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTAAAAT 3269795 Query 72629 CTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662 | || ||||| || ||| | |||| ||||| || Sbjct 3269796 CACGATCGTATATTATAGCAGAATCCAGTTTCTC 3269829 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 71037 AAGGTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||||| | || | |||| |||||| || || | ||| || || || ||||| | Sbjct 3267786 AAGGTGTTTACT-TGAACAGATCCAAAATTCGCGAGTATCTCGTTCTTCATATCTTCGTC 3267844 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||||| ||| ||||||| ||| | | ||| ||||| || | ||||||||| Sbjct 3267845 CCATAGACCTCTACTGGTTAAATCTCGCAATAAATGCGGATTGACAATGATAAATTCTCC 3267904 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 ||||||||| | | || ||||| || ||||||||||| | || || ||||| || Sbjct 3267905 AGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCAATGGATTCGTTATTCCC 3267964 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCT 71270 |||||||| || || || || || ||||||||||| | || || |||||| Sbjct 3267965 TAAAATTTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGCGAATTTCT 3268018 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| ||||||||||||||||||||| || || ||| | ||||| || |||| | Sbjct 3270040 CACTAAAACTTTTTTTTGTTTCCTTGTGTAGGTTGGACACGTCAATTCTTGCAGCTAATA 3270099 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | |||||||| ||||||| || | || || || |||| ||||||||| | || | Sbjct 3270100 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAA 3270159 Query 72881 ATTCTACCGTTGTTACTCCATTATATA 72907 | || || ||||||||| ||||| Sbjct 3270160 GTATGACTGTAGTTACTCCAGAATATA 3270186 >seq5738 Length=4927432 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| | ||| ||||| | |||||||||||| |||| || ||||| || |||| Sbjct 2905061 CACTAAAAACTTTCTTTGTCTGCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 2905002 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | ||||||||||||||||| || | | | ||||| |||| ||||||| | |||| Sbjct 2905001 TTGCATAATCTGGATGTTGATTAATCATAATCGCTGCAGTTTCAGCTGCCAAGTTATCCA 2904942 Query 72881 ATTCTACCGTTGTTACTCCA 72900 |||| ||||| |||||| Sbjct 2904941 ATTCGCTTGTTGTCACTCCA 2904922 >seq4511 Length=1767931 Score = 89.7 bits (98), Expect = 7e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||||||||||| |||||||| || ||| | |||||||||||||| | ||| || ||| | Sbjct 466216 TACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTCCCAAATGTCAGG 466275 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTG 42653 ||| ||||| |||||||| ||||| | |||| Sbjct 466276 ATACTGAATAGGGAAAATTACAAAACGGTTTG 466307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671090240395360