Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5634 165 6e-36 seq5320 104 2e-17 >seq5634 Length=4821945 Score = 165 bits (182), Expect = 6e-36 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || ||||||||| || || ||||| |||||||| ||||||||||| ||| |||| | Sbjct 1938260 TCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCC 1938319 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||||||||| ||| | |||| ||| ||||| || ||||||||||||||| Sbjct 1938320 ATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTT 1938379 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| |||||| ||| ||| |||| |||||||| | ||| || || | ||||| Sbjct 1938380 GTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCGACTTCGAGAGTAAT 1938439 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || |||||||| || || |||||||| Sbjct 1938440 CGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938475 Score = 150 bits (166), Expect = 1e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| ||||| || || ||||||||| ||| |||| | ||||| | |||| Sbjct 1938501 TGAAGTGTGGATTCTTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCCAGTTGT 1938560 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||||||| ||||| || ||||||||||||||| || |||||| Sbjct 1938561 TTGCCGGCGAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGGATTTTG 1938620 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||||| |||| ||||| || | ||| || || | |||||||||||||| || Sbjct 1938621 GCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGAGTAATGGTTTTACCGGTG 1938680 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || || |||||||| Sbjct 1938681 AGAGTTTTCACGAAGATTTGCAT 1938703 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| ||||| |||||||| || |||||||| ||| |||| | ||||| Sbjct 1939178 AACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTTCTGCCATCTTC 1939237 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| |||||||| | |||| ||| || || || |||||||| ||||| || Sbjct 1939238 AAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATCTTG 1939297 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| |||||| |||| ||||| || | ||| || || | ||| |||||||| Sbjct 1939298 AATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTTTT 1939357 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || ||||| |||||||| || ||||| Sbjct 1939358 ACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 Score = 131 bits (144), Expect = 1e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| ||||| || ||||| || || || | || ||||||| || ||| Sbjct 1938957 TGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAGAGTGTCCTACCGTCTTCCAACTGT 1939016 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || |||||| | ||||||||||| ||||| ||||| ||||||||||| || || Sbjct 1939017 TTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGGATCTTA 1939076 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| |||||| ||||||| || || | ||| || || | ||| || |||||||| || Sbjct 1939077 GCT-TTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGGGTGATAGTTTTACCCGT 1939135 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| |||||||| Sbjct 1939136 GAGAGTTTTCACAAAGATTTGCAT 1939159 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||||||||| || |||||||| ||||| || || || | || |||| || Sbjct 1938722 AACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCGAGAGTGTCCTACCGTCCTC 1938781 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||| ||||| ||||| | ||||||||||| ||||| ||||| ||||||||||| Sbjct 1938782 TAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTG 1938841 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || ||| ||||| ||||||| || || ||| || || | || ||||||| Sbjct 1938842 GATCTTAGCT-TTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGAGTGATGGTTT 1938900 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || |||||||| || || |||||||| Sbjct 1938901 TACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938931 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || || || |||||||| || ||| |||| | || || Sbjct 1939406 AACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTC 1939465 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || |||||| ||||| | ||||||||||| || || ||||| ||||||||||| Sbjct 1939466 TAGTTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTTG 1939525 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||||| ||| || ||| | || || || || | ||| || || | ||| ||||||| Sbjct 1939526 GATTTTAGCT-TTGACATTCTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTT 1939584 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || ||||||||||| |||||||| Sbjct 1939585 TTCCAGTGAGGGTTTTTACAAAGATTTGCAT 1939615 >seq5320 Length=807335 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | ||||| ||||| || || ||||| || || | | | ||||| Sbjct 501860 AACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTC 501801 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| |||||| | ||||| | || || || ||||||||||||||||| Sbjct 501800 AAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTG 501741 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| ||| ||| | || || || ||| || || || || || ||||| || Sbjct 501740 AATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCAACTTCCAATGTGATGGTCTT 501681 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| || ||||||||||| Sbjct 501680 TCCTGTCAGGGTTTTGACGAAAATTTGCAT 501651 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | ||| || || ||||| || ||||| || || | | | ||||| Sbjct 502316 AACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTC 502257 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| |||||| | ||||| | || || || ||||||||||||||||| Sbjct 502256 AAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTG 502197 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| ||| ||| |||| || || || || || || | || ||||| || Sbjct 502196 AATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAACTTCCAGCGTGATGGTCTT 502137 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| | ||||| ||||||||||||||| Sbjct 502136 TCCTGTTAATGTTTTGACAAAAATTTGCATA 502106 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || ||||| ||||| | ||||| |||||||| |||||||| || || | | | Sbjct 502549 CTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGGCCA 502490 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | ||||| || ||| | ||||| | || || || ||| |||||||| ||| Sbjct 502489 TCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTG 502430 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||||||| || ||| | || || || || || || || || || ||| Sbjct 502429 TCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAACGTGATG 502370 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| | ||||| || |||||||||||| Sbjct 502369 GTCTTTCCTGTTAATGTTTTGACGAAAATTTGCATA 502334 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | ||| || || ||||| || || || || || | | ||||||| Sbjct 502772 AACCAAATGCAAGGTAGATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGACCGTCTTC 502713 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| || ||| | || || | || ||||| || |||||||| ||||| Sbjct 502712 AAGTTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTG 502653 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| || ||| | || || || || ||| || || | ||||| ||||| Sbjct 502652 AATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACTTCCAGAGTAATTGTTTT 502593 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || ||||| ||||||||||||||| Sbjct 502592 ACCGGTAAGCGTTTTGACAAAAATTTGCATA 502562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362153439551676