Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5320 104 2e-17 seq5634 102 7e-17 >seq5320 Length=807335 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || |||| |||||||| || || |||||||| ||||| || | Sbjct 502561 CCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAA 502502 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || |||||||| || || | || | ||||||||||||| || Sbjct 502501 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 502442 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| |||||| ||| || | ||| ||| || | ||| | Sbjct 502441 ATTCCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACT 502382 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || |||||||| |||||||| ||||||||||| Sbjct 502381 TCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| || || ||||| ||||||||||||||||| || | | ||| | || || Sbjct 502315 ACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCA 502256 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || ||||| || || | || | ||||||||||||| ||| | || |||||||| | Sbjct 502255 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGA 502196 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | ||| || || | ||| ||| | || ||||| || Sbjct 502195 ATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAACTTCCAGCGTGATGGTCTTT 502136 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||||||| |||||||||||||||||||| Sbjct 502135 CCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| ||||| |||||||||||||| || || | | ||| |||| || Sbjct 502771 ACCAAATGCAAGGTAGATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGACCGTCTTCA 502712 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || ||||| || || | || | |||||||| ||| || | || || ||||| | Sbjct 502711 AGTTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGA 502652 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTT 19011 ||||| ||| || | ||| || || | | ||| || ||| | ||||| ||||| Sbjct 502651 ATTTTGGCTTTGACATTCTCGATCGTGTC-CGACGCTTCGACTTCCAGAGTAATTGTTTT 502593 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | |||||||||||||||||||| Sbjct 502592 ACCGGTAAGCGTTTTGACAAAAATTTGCAT 502563 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||||| || || || ||||||||||| || | | ||| | | || || Sbjct 502087 ACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCG 502028 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || || | || | ||||||||||||| || | || || ||||| | Sbjct 502027 AGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGA 501968 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||| || | ||| ||| || | ||| ||| | || || || || Sbjct 501967 ATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAGCGTGATTGTCTTT 501908 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || ||||| ||||||||||| Sbjct 501907 CCTGTCAATGTCTTGACGAAAATTTGCAT 501879 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || || || || ||||||||||| || | | ||| | || || Sbjct 501859 ACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCA 501800 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || ||||| || || | || | ||||||||||||| ||| | || |||||||| | Sbjct 501799 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGA 501740 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | ||| || ||| | ||| ||| | || ||||| || Sbjct 501739 ATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCAACTTCCAATGTGATGGTCTTT 501680 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| | |||||||| |||||||||||| Sbjct 501679 CCTGTCAGGGTTTTGACGAAAATTTGCATT 501650 >seq5634 Length=4821945 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||||||||| | | | |||| ||| | || || || ||||||||||||||||| | Sbjct 1939159 TTCCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAG 1939218 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| || | || || || || || || ||| |||| || | |||||||||| || Sbjct 1939219 AGAGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGG 1939278 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||||| || |||||| ||||| | | | || || | | ||| || Sbjct 1939279 GAATTCCCTCTTTATCTTGAATTTTGGCCTTTACGTTTTCAATGGTGTC-CGAAGCTTCG 1939337 Query 18993 -TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||| ||||||||||| || | ||| || ||||| || ||||| Sbjct 1939338 ACTTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414543312991384