Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq5634 102 5e-17 seq5320 98.7 6e-16 >seq5634 Length=4821945 Score = 102 bits (112), Expect = 5e-17 Identities = 156/217 (72%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG-GTCATC 33219 ||||| || | ||| || |||||||| |||||||||||||| | ||||| | |||| Sbjct 1939179 ACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAGA----GAGTTCTGCCATC 1939234 Query 33220 --CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||| |||||| ||| ||| || | ||| ||||| |||| ||| || || ||||| || Sbjct 1939235 TTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATC 1939294 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| ||| ||||| | || || || || || || Sbjct 1939295 TTGAATTTTGGCCT---TTACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTGAT 1939351 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| ||||||||||| ||||| || || |||||| Sbjct 1939352 GGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATG 1939388 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||||||| | || || |||||||| || || || || || | | | Sbjct 1938717 CGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCGAGAGTGTCCTACCG 1938776 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || || || || ||| ||| || |||||||||||||| | || ||||||||||| Sbjct 1938777 TCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTTG 1938836 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| || ||||| || || ||| || ||||| || Sbjct 1938837 TCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGAGTGATG 1938896 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || |||||||| ||||| |||||||| Sbjct 1938897 GTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938931 Score = 84.2 bits (92), Expect = 1e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 ||| ||||| || || ||| || || |||||||||||||| | || ||||||||||| Sbjct 1939004 GTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTT 1939063 Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || ||| |||||| ||| || ||||| | || ||| || || || || Sbjct 1939064 GTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGGGTGAT 1939123 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| ||||| |||||||| || || |||||||| Sbjct 1939124 AGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 1939159 >seq5320 Length=807335 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | ||| || | |||||||||||||| || ||||| || |||||||| ||||| Sbjct 501878 ACCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGA 501819 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || | || || | ||| |||||| || || || | ||||| |||| ||| Sbjct 501818 AAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGG 501759 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || || | ||| || || | | ||||||||| | | Sbjct 501758 AATTCCTTCTTTGTCTTGAATTTTGGCC---TTGACATTCTCGATCGTGTCGGACGCCTC 501702 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||| || || || ||||| || || ||||| |||||||||||||| Sbjct 501701 AACTTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATTTGCAT 501651 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | ||| || | ||||||||||| || || || ||||| ||||| || ||||| Sbjct 502790 ACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTTTGAATATTATAGTCAGA 502731 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || | ||| || | ||| || || || ||||| | |||||||||| || Sbjct 502730 AAGTGTGCGACCGTCTTCAAGTTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGAGG 502671 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| ||| || | | |||||||| | || || Sbjct 502670 GATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGAC 502611 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || ||||| || ||||| ||||| || ||||||||||| Sbjct 502610 TTCCAGAGTAATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 502563 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | || || || || || ||||||||||||||||| | || || ||| Sbjct 501403 ACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAGACAAGGTACGTCCATCTTCC 501344 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||||||| ||| || ||||| ||||| || | || |||||||| || || Sbjct 501343 AGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGAATGCCTTCCTTATCCTGG 501284 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| |||||| | | || ||||| | | ||| || |||||||| || || Sbjct 501283 ATCTTTGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTC 501224 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || | || || || ||||| |||||| Sbjct 501223 CCAGTCAATGTCTTCACAAAAATCTGCATG 501194 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| || || || || ||||| |||||||| ||||| | || | || || Sbjct 502315 ACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCA 502256 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| |||||| || || || | ||||| |||| ||| || |||||||| || | Sbjct 502255 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGA 502196 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 || |||| | || ||| |||||||| | | ||| ||||| || || || Sbjct 502195 ATTTTGGCCT---TGACATTTTCGATCGTGTCTGACGCCTCAACTTCCAGCGTGATGGTC 502139 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || | ||||| || ||||||||||| Sbjct 502138 TTTCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318754926544728