Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq5320 89.7 4e-13 seq5634 87.8 1e-12 >seq5320 Length=807335 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||||| || || ||||||||||| || || | | || |||| || Sbjct 502315 ACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCA 502256 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||||||||| || || ||||| | ||||| ||| | || | |||||||| ||| | Sbjct 502255 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGA 502196 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | | | || |||| || ||| || || | ||| || || || Sbjct 502195 ATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAACTTCCAGCGTGATGGTCTTT 502136 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || || ||||| |||||||| Sbjct 502135 CCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || || |||||||||||||| || | | || | || || Sbjct 502771 ACCAAATGCAAGGTAGATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGACCGTCTTCA 502712 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||| || || || || |||| ||||||||| |||| | ||||| || ||| | Sbjct 502711 AGTTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGA 502652 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| |||||| | | | || || | || || || || | |||||||||||| Sbjct 502651 ATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACTTCCAGAGTAATTGTTTTA 502592 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | || || ||||| |||||||| Sbjct 502591 CCGGTAAGCGTTTTGACAAAAATTTGCAT 502563 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 || || |||||||| | |||| ||||||||||| || || || | | || || Sbjct 502549 CTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGGCCA 502490 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | |||||||| || || ||||| | ||||| ||| | || | ||||| || Sbjct 502489 TCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTG 502430 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| |||||| ||| || | | | ||| |||| || ||| || || | ||| || Sbjct 502429 TCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAACGTGATG 502370 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||| || || || || |||||||| Sbjct 502369 GTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | |||||| | |||||||| || || || || |||||||| ||||| Sbjct 501421 CCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAGAC 501362 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || ||| |||| |||| || ||||| ||||| ||||| || ||||| || | || Sbjct 501361 AAGGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGA 501302 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| ||||| || ||| ||| || | | | ||| || | | ||| || Sbjct 501301 ATGCCTTCCTTATCCTGGATCTTTGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAACT 501242 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || || || || ||||||||||| || |||||| Sbjct 501241 TCAAGAGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCATG 501194 >seq5634 Length=4821945 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971 |||| || || ||| ||||| || ||||| |||||| | | | || |||| || Sbjct 1938495 ACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCGGAAAGAGTTCTGC-CATCTTC 1938553 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || |||||| || || || ||||| || || || ||| | || | |||||||||||| Sbjct 1938554 CAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTG 1938613 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||| || || | ||| || |||| | || || |||| ||||| ||||| Sbjct 1938614 GATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGAGTAATGGTTTT 1938673 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| | ||| ||||| || |||||||| Sbjct 1938674 ACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354752365999728