Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq5634 100 2e-16 >seq5634 Length=4821945 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || || || || ||||| ||||||||||| ||||||||||| | |||| | |||| Sbjct 1938264 AAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCATCT 1938323 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 |||| ||||||||| || |||| || | ||||||||| || | ||||||||||| Sbjct 1938324 TCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTGTCC 1938383 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||| ||||| | | | | ||| || ||| ||| | ||||| ||| Sbjct 1938384 TGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCGACTTCGAGAGTAATCGTT 1938443 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || ||||| | ||||| || || ||||||||| Sbjct 1938444 TTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938476 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || |||| || ||||| |||||||| || || ||||||||| Sbjct 1938475 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCGG 1938534 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||||| ||||||||| || |||| | | ||||||||| | Sbjct 1938535 AAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGATCCGGTG 1938594 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||||| || || | ||| | || || ||| Sbjct 1938595 GAATTCCTTCTTTATCTTGGATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGA 1938654 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||||||||||| ||||| | ||||| || || ||||||||| Sbjct 1938655 CTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938704 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | | ||||| || ||||| ||||||||||| || |||||||| Sbjct 1939159 TTCCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAG 1939218 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||| | ||| ||||| ||| |||| || | ||| ||||| || Sbjct 1939219 AGAGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGG 1939278 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || ||||| || |||||| || || | ||| | || || ||| Sbjct 1939279 GAATTCCCTCTTTATCTTGAATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGA 1939338 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | ||| |||||||| || || | || || ||||| || ||||| Sbjct 1939339 CTTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419557356335916