Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq5634 113 4e-20 seq4085 102 7e-17 seq5320 91.5 1e-13 >seq5634 Length=4821945 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | ||| ||||| || |||||| || ||||| ||||||||||||| Sbjct 1938248 ACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 1938307 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || | || ||||| || || ||| || |||| | |||||| |||||| || Sbjct 1938308 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 1938367 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||| |||||| ||||| ||| | | | |||||||| | || || || Sbjct 1938368 AATTCCTTCTTTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAG-CTTCGA 1938426 Query 48679 C-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | |||| || || ||||||||||||||||||||||| || || ||||| Sbjct 1938427 CTTCGAGAGTAATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938475 >seq4085 Length=6844556 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 48539 TTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATT 48598 ||||| ||||||||||||| ||| || | ||||||||||| || ||| || | || Sbjct 2742648 TTTTGGATGTTGTAATCAGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 2742707 Query 48599 AAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCT 48658 | ||||| ||||| || | | ||||||||| || || ||||| | | | Sbjct 2742708 AGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 2742767 Query 48659 ATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAA 48718 |||||||| | | ||| ||||| || || |||||||| ||||| |||||||| || Sbjct 2742768 ATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCCGTGAGGGTTTTCACGAAG 2742827 Query 48719 ATCTGCATCGTGTCTT 48734 |||||||| ||| ||| Sbjct 2742828 ATCTGCATGGTGGCTT 2742843 >seq5320 Length=807335 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || ||||| || | || |||||||| || ||||| ||||| |||||||||| | Sbjct 501421 CCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAGAC 501362 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | || ||||||||||| || | | || |||||||||||||| || Sbjct 501361 AAGGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGA 501302 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||| || | | | | || || || | || ||| Sbjct 501301 ATGCCTTCCTTATCCTGGATCTT-TGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAAC 501243 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || | |||||||| || || || | || ||||||||||||||||| ||| Sbjct 501242 TTCAAGAGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCATGGTG 501191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421221237981836