Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq5132 100 3e-16 >seq5132 Length=4754993 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 164783 TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATA 164842 |||||||| |||||||||||||| | ||| | ||||| |||||||| ||| ||||||| Sbjct 1864813 TTCATGATACAGTGGTTAATCAGCTTCTTGCAAAAATTGATGGTGTTGAACAATTAAATA 1864754 Query 164843 ATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGAC 164902 | ||| | || | |||||||| || || ||| | || ||||| ||||| ||| ||| Sbjct 1864753 ACATTCTTGTTATTGGTATGACTAATAGAAGAGATATGATCGATGAGGCTTTGTTAAGAC 1864694 Query 164903 CTGGTCGATTAGA 164915 |||| |||| || Sbjct 1864693 CTGGCAGATTGGA 1864681 Score = 95.1 bits (104), Expect = 1e-14 Identities = 211/313 (67%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| | ||| | ||||||| | ||||| | ||| || ||| ||||||| Sbjct 1865340 ATTGGGACTTTCAGAAAATGGGTATTGGTGGCTTGGATAAGGAGTTTAGCGCTATTTTCC 1865281 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || |||| ||||| || | |||| | || || | | |||| || || || | Sbjct 1865280 GAAGAGCCTTTGCATCCCGTGTTTTTCCAACGGAGATTGTCACTCAATTGGGTTGCAAGC 1865221 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || |||||||||| || || ||||||| |||||| || || || ||||||||||| Sbjct 1865220 ATGTAAAAGGAATCTTGTTGTATGGACCACCTGGTACAGGAAAGACGTTAATGGCTCGGC 1865161 Query 164573 GCAT-TGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTA 164628 || | ||| | |||||| | || ||| |||||||| |||||||| || | Sbjct 1865160 AAATAGGAACAA--TGTTAAATGCAAGGGAACCG--AAAATTGTAAATGGTCCACAAATT 1865105 Query 164629 TTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAA 164688 ||| | |||||||| || ||| || ||||| | |||| ||||| || || ||| Sbjct 1865104 TTGGATAAATATGTTGGAGAGAGCGAGGCTAACATCAGAAGATTGTTCGCTGATGCAGAA 1865045 Query 164689 GAAGAACAAAAGA 164701 || ||| |||||| Sbjct 1865044 GAGGAAGAAAAGA 1865032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595828531137600