Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq5706 217 8e-52 >seq5706 Length=5419331 Score = 217 bits (240), Expect = 8e-52 Identities = 375/542 (69%), Gaps = 2/542 (0%) Strand=Plus/Plus Query 3604 GAATGATGGATCAAATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTT 3663 ||||| || | ||||||||| | || || || || || || ||||||||||||||||| Sbjct 3180712 GAATGTTGATCCTAATGAATTGCTGTACTTCGCAGATGTGTGTGCTGGTCCAGGTGGTTT 3180771 Query 3664 CAGTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACG 3723 ||| ||||| || || | | |||||||||| | ||||| | ||| | || ||| Sbjct 3180772 CAGCGAATACATTTTGTCAAAAAAGAAATGGCACGCTAAAGGATTTGGATTCACTTTAAA 3180831 Query 3724 CGaaaaaaaTGATTTTCAACTGAACAGATTTTACGATAACTTTTCGGAAACTTTACACCC 3783 | ||||||||||| | || | || | || | | | |||||||| || || Sbjct 3180832 GAATGAAAATGATTTTTCATTGGATGACTTCTTCGCTGGCCCATGTGAAACTTTCCATCC 3180891 Query 3784 GTATTATGGTCCGCTTAA-CGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTT 3842 || |||||| | || | | | || || | | | | |||||||| | | ||| Sbjct 3180892 GTTTTATGG-CAGCAAAGGCAACGGAGATGTATTTGACGCGCAAAATCAAAGGGAGTTTA 3180950 Query 3843 GTGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTG 3902 | ||| | ||| | |||| || |||||||||||||| |||||| | || || | Sbjct 3180951 GATCAATAGTGATGGGACATACTGATAATAAAGGTGTACATTTCATGATGTCAGATGGAG 3181010 Query 3903 GGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGT 3962 | || || || || |||||||||||||| || || || |||||||| | | ||| | | Sbjct 3181011 GATTTTCAGTGGAAGGTCAAGAAAATATACAGGAGATTTTATCGAAGCAATTATATCTTT 3181070 Query 3963 GTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTT 4022 ||||||| ||| | ||||||||||| | || ||||| |||| ||||| ||| | | Sbjct 3181071 GTCAATGCTTAGTGGCATTGATGATAGTGAGACCAGGTGGACATTTTGTTACAAAACTGT 3181130 Query 4023 TCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATC 4082 ||||| |||||||||| ||||| | ||| | || ||| |||||||| | ||| | Sbjct 3181131 TCGATCTATTTACACCATTTAGCGTTGGGCTTGTTTATCTGATGTATCATTGCTTTGAAA 3181190 Query 4083 GTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTGT 4142 |||||| |||||||| || || | || |||| || ||||| ||| | || ||| | | Sbjct 3181191 GTATTTCGATTTTCAAGCCTAATACTTCCAGACCAGCTAATTCAGAACGTTACTTGATAT 3181250 Query 4143 GT 4144 || Sbjct 3181251 GT 3181252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276533929779508