Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5216 127 1e-24 seq5738 125 4e-24 seq5531 122 5e-23 seq4129 122 5e-23 seq5563 118 6e-22 >seq5216 Length=5828884 Score = 127 bits (140), Expect = 1e-24 Identities = 84/93 (90%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| ||||||||| || ||||||||||| |||||||||| ||||||||||||||||| Sbjct 348055 AATAAATAAAAAA--AACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 347998 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 347997 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 347965 >seq5738 Length=4927432 Score = 125 bits (138), Expect = 4e-24 Identities = 80/87 (92%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 3898004 TAAAAAA--AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 3898061 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 3898062 CGCTCTAACCAACTGAGCTAATGGGCC 3898088 Score = 84.2 bits (92), Expect = 1e-11 Identities = 81/101 (80%), Gaps = 13/101 (13%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACC-TTCGCGTTA 11493 ||| ||||||||| ||| ||||| || |||||||||| ||||| ||||||||| Sbjct 3897083 AATAAATAAAAAAAAAAAAGGTGGCC--TG---GGATCGAACCCGCGACCCTTCGCGTTA 3897029 Query 11494 TTAGCACGACGCTCTR-----ACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 3897028 TTAGCACGACGCTCTGCGTCTACCAACTGAGCTAATGGGCC 3896988 Score = 84.2 bits (92), Expect = 1e-11 Identities = 81/101 (80%), Gaps = 13/101 (13%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACC-TTCGCGTTA 11493 ||| ||||||||| ||| ||||| || |||||||||| ||||| ||||||||| Sbjct 3898358 AATAAATAAAAAAAAAAAAGGTGGCC--TG---GGATCGAACCCGCGACCCTTCGCGTTA 3898412 Query 11494 TTAGCACGACGCTCTR-----ACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 3898413 TTAGCACGACGCTCTGCGTCTACCAACTGAGCTAATGGGCC 3898453 >seq5531 Length=5527225 Score = 122 bits (134), Expect = 5e-23 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 386634 AAAAAATAAGTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 386693 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 386694 GCTCTAACCAACTGAGCTAATGGGCC 386719 >seq4129 Length=1447616 Score = 122 bits (134), Expect = 5e-23 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||| | || || | ||||| || ||||||||||| |||||||||| ||||||||| Sbjct 581726 AAATGTTAAAATATTGAAAAAAAAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 581785 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 581786 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 581826 >seq5563 Length=1895760 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1317129 AAAAAAT--ATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1317072 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1317071 GCTCTAACCAACTGAGCTAATGGGCC 1317046 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261472601111536