Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5738 206 4e-49 seq5216 174 2e-39 seq5352 161 2e-35 >seq5738 Length=4927432 Score = 206 bits (228), Expect = 4e-49 Identities = 206/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| ||||||||||| || |||||||||||||||||| Sbjct 159751 GCGAAGCGTCACAGGAAAGTTCTTCGCGATAACATCCAGGGTATCACCAAGCCAGCTATC 159692 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| || |||||||| ||||||||| |||| || ||| |||| ||||| | | Sbjct 159691 CGTCGTTTGGCACGCCGTGGTGGCGTCAAGCGTATCTCCGGCTTGATCTACGAAGAAACT 159632 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||||| |||||||| ||| |||||| | |||||| | || || || Sbjct 159631 CGAGGTGTGTTGAAGGTCTTCCTCGAGAACGTTATTCGCGATGCTGTTACTTACACTGAA 159572 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || || ||||||| |||| || || |||||||||||||| Sbjct 159571 CACGCGAAAAGGAAGACCGTGACAGCCATGGACGTCGTATACGCCCTGAAACGTCAAGGC 159512 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 159511 AGAACTCTATACGGCTTTGGTGGTTAA 159485 >seq5216 Length=5828884 Score = 174 bits (192), Expect = 2e-39 Identities = 182/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | || || ||||||||||| || || ||||| ||||| ||| Sbjct 797983 GCAAAGAGACATCGTAAAGTACTCCGTGATAACATCCAGGGGATTACCAAACCAGCCATC 798042 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| |||||||| |||||||||||| | || |||||| | |||||||| | Sbjct 798043 CGCCGTCTGGCACGTCGTGGCGGAGTCAAGCGTATTTCCGGATTGATTTATGAAGAAACA 798102 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||| | | | |||||| | ||| || | ||| |||||| Sbjct 798103 CGTGGTGTACTGAAGGTGTTCTTAGAAAACGTTATTCGTGACGCGGTTACCTACACCGAG 798162 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | |||||||| || ||||||| ||||||| || ||||||||||||| Sbjct 798163 CATGCAAAAAGAAAGACTGTGACTGCCATGGACGTCGTCTACGCCCTGAAACGTCAAGG 798221 >seq5352 Length=3880479 Score = 161 bits (178), Expect = 2e-35 Identities = 182/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||||||||| |||||||||||||| || ||||| ||||| | ||||| || Sbjct 148538 CGTGATAACATCCAAGGTATCACCAAGCCAGCCATTCGTCGATTGGCTAGACGTGGCGGC 148479 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| | ||||| ||| |||| ||||||| | | ||| | || |||| || Sbjct 148478 GTCAAGCGTATTTCTGGCTTGATCTACGAAGAGACCAGAGGTGTCCTAAAAGTCTTTCTG 148419 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | ||| || | ||||||| | ||||||||| ||||| || | |||||||| || Sbjct 148418 GAAAACGTCATTCGTGATGCTGTGACCTATACCGAACACGCCAAGAGGAAGACTGTAACA 148359 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| | ||||| || ||||||||||||| | | | |||||||| || || Sbjct 148358 GCTATGGACGTGGTCTACGCTCTGAAACGTCAAGGAAGAACCCTCTATGGTTTCGGTGGT 148299 Query 16697 TAAT 16700 |||| Sbjct 148298 TAAT 148295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069864104348