Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5665 102 1e-16 seq5738 91.5 2e-13 >seq5665 Length=3828390 Score = 102 bits (112), Expect = 1e-16 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 62231 AAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62290 ||||| | || | |||| |||||| || || | ||| ||||| || || || | Sbjct 3267786 AAGGTGTTTACT-TGAACAGATCCAAAATTCGCGAGTATCTCGTTCTTCATATCTTCGTC 3267844 Query 62291 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62350 ||||| ||| ||||||| ||| | | ||||||||| || | ||||||||| Sbjct 3267845 CCATAGACCTCTACTGGTTAAATCTCGCAATAAATGCGGATTGACAATGATAAATTCTCC 3267904 Query 62351 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62410 ||||||||| | || || ||||| || ||||||||||| | || || ||||| || Sbjct 3267905 AGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCAATGGATTCGTTATTCCC 3267964 Query 62411 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62446 |||||||| || || || || || ||||||||||| Sbjct 3267965 TAAAATTTGTGCCGTCGAGGCCGTTGGCATAGGTGC 3268000 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 ||||||| ||||||||||||||||||||| || || ||| | ||||| || |||| | Sbjct 3270040 CACTAAAACTTTTTTTTGTTTCCTTGTGTAGGTTGGACACGTCAATTCTTGCAGCTAATA 3270099 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | |||||||| ||||||| || | || || || |||| ||||||||| | || | Sbjct 3270100 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAA 3270159 Query 64075 ATTCTACCGTTGTTACTCCATTATATA 64101 | || || ||||||||| ||||| Sbjct 3270160 GTATGACTGTAGTTACTCCAGAATATA 3270186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 186/275 (68%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 63583 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642 |||| | || ||||| || || | |||| | ||||| |||| || || ||||| | Sbjct 3269556 GAAATTACCTGGACATCTGTTGGTTATTAGTACAGGCATTGAATAGAGTTGGTGAAGCAT 3269615 Query 63643 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63701 | ||||| || ||| || || || ||| || || || || || || || || | Sbjct 3269616 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATCTCATTT 3269674 Query 63702 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63761 | |||||| || || || || | ||| ||||| || ||||| || || || ||||| Sbjct 3269675 TCATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCA 3269734 Query 63762 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63821 || ||||||| || || | | || | ||||||||||||| ||| || || ||| Sbjct 3269735 TTGATTTTCAGCAGATAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTAAAA 3269794 Query 63822 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63856 || || ||||| || ||| | || | ||||| || Sbjct 3269795 TCACGATCGTATATTATAGCAGAATCCAGTTTCTC 3269829 >seq5738 Length=4927432 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 ||||||| | ||| ||||| | |||||||||||| |||| || ||||| || |||| Sbjct 2905061 CACTAAAAACTTTCTTTGTCTGCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 2905002 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | |||||||| |||||||| || | | | ||||| |||| ||||||| | |||| Sbjct 2905001 TTGCATAATCTGGATGTTGATTAATCATAATCGCTGCAGTTTCAGCTGCCAAGTTATCCA 2904942 Query 64075 ATTCTACCGTTGTTACTCCA 64094 |||| ||||| |||||| Sbjct 2904941 ATTCGCTTGTTGTCACTCCA 2904922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622901756001760