Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq5320 107 2e-18 seq5634 102 7e-17 seq5499 82.4 6e-11 >seq5320 Length=807335 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||||||||| ||||| || ||||| ||||| | || ||| | Sbjct 503019 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCA 503078 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | ||||| |||||| |||||||||||| | || ||||| Sbjct 503079 GACACGATCGAAAATGTAAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 503138 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||| |||| |||||||| || ||||||||| || | |||| ||||| Sbjct 503139 CAAAGACTGATTTTCGCGGGCAAGCAGCTAGAAGATGGACGGACTTTATCCGACTATAAT 503198 Query 115466 ATTCAAAAAGAGTCTAC 115482 ||||| ||||||||||| Sbjct 503199 ATTCAGAAAGAGTCTAC 503215 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| |||||||| | || ||||| ||||| || | ||| ||| | Sbjct 502335 ATGCAAATTTTCGTCAAAACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 502394 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| | | | || ||| |||||| || || ||||| |||| |||||| Sbjct 502395 GACACTATCGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGATCAG 502454 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | || | || || ||||| | ||||||| | || | | || || ||| Sbjct 502455 CAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAC 502514 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 ||||||||||| || || | ||| |||| ||||| Sbjct 502515 ATTCAAAAAGAATCCACGTTGCATTTGGTTTTGAG 502549 >seq5634 Length=4821945 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || || ||||| |||||||| ||| ||||| || | Sbjct 1939387 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTCG 1939328 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | ||||| |||||| |||||||| || | ||| |||||| Sbjct 1939327 GACACCATTGAAAACGTAAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCGGATCAG 1939268 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || |||| ||| ||||| ||| | ||||||| || ||| | | ||||| || Sbjct 1939267 CAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTACAAT 1939208 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||||| || || | || |||| | | | |||||||||| Sbjct 1939207 ATTCAAAAAGAATCCACACTTCACTTGGTTCTTCGTCTTCGAGGAGGAA 1939159 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CGGAG-TCC 115342 ||||||||| || || ||||| ||||| || ||||||||||| ||||| || || | | Sbjct 1938704 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 1938645 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || |||| ||| | | ||||| ||||| ||||||||||| | || ||| Sbjct 1938644 AG--ACACCATTGAAAACGTAAAGGCCAAAATCCAAGATAAAGAAGGAATTCCACCGGAT 1938587 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || | | |||| || ||||||||| | ||||||| || ||| | ||||||| Sbjct 1938586 CAACAGCGTTTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCCGATTAC 1938527 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || || ||||| || || | || |||| || | | |||||||||| Sbjct 1938526 AATATCCAGAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGGAA 1938475 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 115277 AGATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACG 115336 ||||| | |||||||| ||||| ||||| ||||| ||||||||||| ||| | || | Sbjct 1939624 AGATTTATCATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTG 1939565 Query 115337 GAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCC 115396 || | |||||| | | | || ||| ||||| || |||||||| | || Sbjct 1939564 GAAGCTTCTGACACTATCGAGAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCT 1939505 Query 115397 GTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCC 115456 ||||||||| | | || | ||| || |||||| |||| |||| || ||| | | Sbjct 1939504 CCAGATCAGCAACGTTTGATCTTTGCTGGAAAACAACTAGAGGATGGCAGAACTCTTTCT 1939445 Query 115457 GATTATAACATTCAAAAAGAGTCTAC 115482 || || ||||| || || || ||||| Sbjct 1939444 GACTACAACATCCAGAAGGAATCTAC 1939419 >seq5499 Length=536236 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 |||||||||||| | || | ||| || || ||||| ||||| | || ||| | | || Sbjct 171222 GATCAGCAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTATCGGAC 171281 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || || || |||||| ||||| | |||||| | |||||||| || Sbjct 171282 TATAACATCCAGAAGGAATCTACTTTACATTTAGTGTTGCGCTTGCGAGGCGG 171334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425313746876320