Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5665 102 1e-16 seq5738 86.0 8e-12 >seq5665 Length=3828390 Score = 102 bits (112), Expect = 1e-16 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 62086 AAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 ||||| | || | |||| |||||| || || | ||| ||||| || || || | Sbjct 3267786 AAGGTGTTTACT-TGAACAGATCCAAAATTCGCGAGTATCTCGTTCTTCATATCTTCGTC 3267844 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||||| ||| ||||||| ||| | | ||||||||| || | ||||||||| Sbjct 3267845 CCATAGACCTCTACTGGTTAAATCTCGCAATAAATGCGGATTGACAATGATAAATTCTCC 3267904 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 ||||||||| | || || ||||| || ||||||||||| | || || ||||| || Sbjct 3267905 AGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCAATGGATTCGTTATTCCC 3267964 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62301 |||||||| || || || || || ||||||||||| Sbjct 3267965 TAAAATTTGTGCCGTCGAGGCCGTTGGCATAGGTGC 3268000 Score = 87.8 bits (96), Expect = 2e-12 Identities = 186/275 (68%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 |||| | || ||||| || || | |||| | ||||| |||| || || ||||| | Sbjct 3269556 GAAATTACCTGGACATCTGTTGGTTATTAGTACAGGCATTGAATAGAGTTGGTGAAGCAT 3269615 Query 63498 GAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63556 | ||||| || ||| || || || ||| || || || || || || || || | Sbjct 3269616 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATCTCATTT 3269674 Query 63557 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63616 | |||||| || || || || | ||| ||||| || ||||| || || || ||||| Sbjct 3269675 TCATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCA 3269734 Query 63617 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63676 || ||||||| || || | | || | ||||||||||||| ||| || || ||| Sbjct 3269735 TTGATTTTCAGCAGATAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTAAAA 3269794 Query 63677 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63711 || || ||||| || ||| | || | ||||| || Sbjct 3269795 TCACGATCGTATATTATAGCAGAATCCAGTTTCTC 3269829 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/168 (71%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 62431 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 62490 |||||| ||||| | || | | | |||||| ||| ||||| || ||||| ||||| || Sbjct 3268202 ATATGTCTCGTAAGTCCCCTTTTCCGCAGCTAATTCGCAACTAGCTTCTAAGGCACCATA 3268261 Query 62491 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATA 62550 ||||| ||||||||||| || | || || |||| |||||| ||| || || ||||| Sbjct 3268262 ATAAAGCGTTTCGAAGATTTTAATGTTGAGTTCTTTCGCTTCTTTGCTCTCGAAGGGATA 3268321 Query 62551 ---ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 |||| || ||||| || |||| ||||| | || ||||| Sbjct 3268322 TCGCATTAACAG---GAACGCATCGGCTAGACCTTGTATTCCTATACC 3268366 >seq5738 Length=4927432 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 ||||||| | ||| ||||| | ||||||||||| |||| || |||||||| |||| Sbjct 2905061 CACTAAAAACTTTCTTTGTCTGCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 2905002 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | |||||||| |||||||| || | | | ||||| |||| ||||||| | |||| Sbjct 2905001 TTGCATAATCTGGATGTTGATTAATCATAATCGCTGCAGTTTCAGCTGCCAAGTTATCCA 2904942 Query 63930 ATTCTACCGTTGTTACACCA 63949 |||| ||||| || ||| Sbjct 2904941 ATTCGCTTGTTGTCACTCCA 2904922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633585776545600