Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5634 145 7e-30 seq5320 134 1e-26 seq4085 100 2e-16 >seq5634 Length=4821945 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | ||||||||| | || || ||||||| || | || Sbjct 1938476 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACGATTACTCTCGAAGTCGAAGCTTC 1938417 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| ||||| |||||| ||||||||||| |||||||| || || Sbjct 1938416 AGATACCATCGAAAATGTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGATCA 1938357 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| |||||||||||| | ||||||| | ||| | |||||||| Sbjct 1938356 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 1938297 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || || ||||| || | || | ||||| Sbjct 1938296 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGCGGAGG 1938249 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | ||||||||| |||| || ||||||| || | || Sbjct 1938704 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 1938645 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| |||||| || |||||||| |||||||| || || Sbjct 1938644 AGACACCATTGAAAACGTAAAGGCCAAAATCCAAGATAAAGAAGGAATTCCACCGGATCA 1938585 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| |||||||||||| | ||||||| | ||| | ||||||||| Sbjct 1938584 ACAGCGTTTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCCGATTACAA 1938525 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || ||||||||||| || || | || || | || ||||||||| Sbjct 1938524 TATCCAGAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGGAA 1938475 Score = 141 bits (156), Expect = 8e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||||||| | || |||||| ||||||| ||||||| || | || Sbjct 1939387 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTCG 1939328 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| | |||| ||| || ||||| || ||||| || || || Sbjct 1939327 GACACCATTGAAAACGTAAAGGCCAAAATTCAA-GATAAAGAGGGAATTCCCCCGGATCA 1939269 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||| ||||| ||| | ||||||| | ||| | |||||||| Sbjct 1939268 GCAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTACAA 1939209 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||||||||||| || || || || || | || ||||||||| Sbjct 1939208 TATTCAAAAAGAATCCACACTTCACTTGGTTCTTCGTCTTCGAGGAGGAA 1939159 Score = 122 bits (134), Expect = 8e-23 Identities = 171/236 (72%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | ||||||||| ||||||| | ||||| || | || Sbjct 1938932 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 1938873 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| || || || | |||| || | || ||||||||||| ||||| |||| Sbjct 1938872 TGACACAATAGAAAACGTAA---AAGCTAAGATCCAA-GACAAAGAAGGCATTCCTCCTG 1938817 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG--CACTGTGGGCGA 25171 |||| || || | || ||||| || ||||| ||||| || | | | |||| | || | Sbjct 1938816 ACCAGCAACGTTTGATCTTTGCTGGTAAACAGTTAGAGGACGGTAGGACACTCTCGG--A 1938759 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || ||||||||||| || || ||||| || || | || ||||||||| Sbjct 1938758 CTATAACATCCAAAAAGAATCTACCCTTCATTTGGTTCTGCGTCTTCGAGGAGGAA 1938703 Score = 118 bits (130), Expect = 9e-22 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || | || || ||| ||||||| | || ||||| | ||| Sbjct 1939615 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 1939556 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||||||| | || |||| |||| || ||||||||||| ||||| || || Sbjct 1939555 GACACTATCGAG--AATGTCAAAGCTAAAATCCAA-GACAAAGAAGGTATTCCTCCAGAT 1939499 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| || |||||| |||| |||| | ||| | || ||| Sbjct 1939498 CAGCAACGTTTGATCTTTGCTGGAAAACAACTAGAGGATGGCAGAACTCTTTCTGACTAC 1939439 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| ||||| ||| | || || | ||| | ||||| Sbjct 1939438 AACATCCAGAAGGAATCTACGCTTCATCTTGTTCTGCGTCTACGTGGAGG 1939389 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || |||||| | ||||| | ||||| || | || Sbjct 1939160 AATGCAAATCTTTGTGAAAACTCTCACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTC 1939101 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || || | || |||| || | || ||||||||||| ||||| ||||| Sbjct 1939100 TGACACAATAGAA--AATGTAAAAGCTAAGATCCAA-GACAAAGAAGGCATTCCTCCTGA 1939044 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | || || || || ||||| || ||||| | | | || | || || Sbjct 1939043 CCAGCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTA 1938984 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || ||||||||||| || || | || || | || ||||||||| Sbjct 1938983 TAACATCCAGAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGGAA 1938931 >seq5320 Length=807335 Score = 134 bits (148), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| || || ||||||| | ||||| ||| |||| Sbjct 502791 ATGCAAATTTTCGTCAAGACATTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCG 502850 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| |||| ||| ||||| ||||| || || || || Sbjct 502851 GACACGATCGAG--AATGTTAAAGCCAAAATTCAG-GACAAGGAAGGAATACCTCCAGAT 502907 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || || ||||| |||||| | ||||||| ||| || | |||||| Sbjct 502908 CAGCAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGTACACTTTCTGATTAC 502967 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||| || |||||||| | ||||| || | ||||| Sbjct 502968 AATATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGGCT 503008 Score = 132 bits (146), Expect = 4e-26 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| || || | ||||| | ||||| ||| |||| Sbjct 501879 ATGCAAATTTTCGTCAAGACATTGACAGGAAAGACAATCACGCTGGAAGTTGAGGCGTCA 501938 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||||||| | || |||| |||| ||| ||||| ||||| || ||||| || Sbjct 501939 GACACTATCGAG--AATGTTAAAGCCAAAATTCAA-GACAAGGAAGGAATCCCACCGGAT 501995 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || || ||||| ||||| | ||||||| ||||| | || ||| Sbjct 501996 CAGCAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTAC 502055 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| |||||||||||| | ||||| || || Sbjct 502056 AATATTCAGAAAGAATCCACGTTGCATTTGGTTCT 502090 Score = 131 bits (144), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || || |||| || || |||||||| | ||||| ||| |||| Sbjct 501650 AATGCAAATTTTCGTCAAAACCCTGACAGGAAAGACCATCACATTGGAAGTTGAGGCGTC 501709 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| |||||| | ||| | |||| ||| ||||||||||| ||||| || || | Sbjct 501710 CGACACGATCGAGAATGTCAAGGCCAAAATTCAA-GACAAAGAAGGAATTCCCCCGGATC 501768 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | | || || || || |||||| | ||||||| |||||| | || |||| Sbjct 501769 AGCAGAGATTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTACA 501828 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| ||||||||||| | ||||| || || Sbjct 501829 ATATTCAGAAAGAATCCACATTGCATTTGGTTCT 501862 Score = 129 bits (142), Expect = 5e-25 Identities = 163/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||| ||||| ||||| || || |||| || | ||||| ||| | Sbjct 501192 ACCATGCAGATTTTTGTGAAGACATTGACTGGGAAGACCATAACTCTTGAAGTTGAGGCT 501251 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 ||||||||||||||| | || |||| ||| ||| || || ||||| ||||||||| Sbjct 501252 TCTGACACTATCGAG--AATGTAAAAGC-AAAGATCCAGGATAAGGAAGGCATTCCACCT 501308 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||||| | || ||||| || || || | ||||||| || || || ||| Sbjct 501309 GATCAGCAGCGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACCTTGTCTGAT 501368 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213 ||||||||||| || ||||| || || ||||| || || || Sbjct 501369 TACAATATTCAGAAGGAATCTACTCTTCATTTGGTCCTCAG 501409 Score = 129 bits (142), Expect = 5e-25 Identities = 163/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || || || || ||||||| | ||||| ||| |||| Sbjct 502335 ATGCAAATTTTCGTCAAAACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 502394 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||||||| | || |||| |||| ||| ||||| ||||| || ||||| || Sbjct 502395 GACACTATCGAG--AATGTTAAAGCCAAAATTCAA-GACAAGGAAGGAATCCCACCGGAT 502451 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || || ||||| ||||| | ||||||| ||||| | || ||| Sbjct 502452 CAGCAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTAC 502511 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || |||||||||||||||||| | ||||| || | ||||| Sbjct 502512 AACATTCAAAAAGAATCCACGTTGCATTTGGTTTTGAGGCT 502552 Score = 127 bits (140), Expect = 2e-24 Identities = 159/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || || || || || ||||||| | ||||| ||| |||| Sbjct 502107 ATGCAAATTTTTGTCAAAACATTAACAGGAAAGACCATCACGCTGGAAGTTGAGGCGTCA 502166 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | || |||| ||| ||||||||||| ||||| || || Sbjct 502167 GACACGATCGAAAATGTCA---AGGCCAAAATTCAA-GACAAAGAAGGAATTCCCCCGGA 502222 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| | | || || || || |||||| | ||||||| |||||| | || || Sbjct 502223 TCAGCAGAGATTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTA 502282 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||| ||||| || ||||||| || || Sbjct 502283 CAATATTCAAAAGGAATCTACCTTACATTTGGTTCT 502318 Score = 118 bits (130), Expect = 9e-22 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | ||||||||| | || || | ||||| || |||| Sbjct 502563 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATTACTCTGGAAGTCGAAGCGTCG 502622 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| |||| ||| ||||| ||||| || || || ||| Sbjct 502623 GACACGATCGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAAGGAATCCCTCCGGAC 502679 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || || ||||| |||||| | ||||| | |||||| | || || Sbjct 502680 CAGCAGAGGTTAATCTTCGCCGGGAAACAACTTGAAGACGGTCGCACACTTTCTGACTAT 502739 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||| ||||| || | ||||| || || Sbjct 502740 AATATTCAAAAGGAATCTACCTTGCATTTGGTTCT 502774 Score = 114 bits (126), Expect = 1e-20 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || |||| || || |||||||| | ||||| ||| |||| Sbjct 501422 AATGCAGATTTTCGTCAAAACCCTGACAGGAAAGACCATCACATTGGAAGTTGAGGCGTC 501481 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| |||||| | || |||| |||| ||| ||||||||||| || || || || Sbjct 501482 GGACACGATCGAG--AATGTCAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCCCCGGA 501538 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| | | || || || || || ||| | ||||||| |||||| | || || Sbjct 501539 TCAGCAGAGATTGATCTTCGCTGGAAAGCAACTTGAAGATGGTCGCACACTTTCTGACTA 501598 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| ||||| ||||||||||| | ||| | || || | ||| | || |||| Sbjct 501599 CAACATTCAGAAAGAATCCACATTGCATCTGGTCCTTCGTCTACGTGGTGGAA 501651 >seq4085 Length=6844556 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || || || | || |||||| | || || |||| || ||| | Sbjct 2742838 ACCATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACTATTACCCTCGAGGTAGAGGCC 2742779 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || |||||| | ||| || ||| ||||| || || |||||||| || Sbjct 2742778 TCTGATACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCACCAGAT 2742719 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || || ||||||||||| | || |||| |||||| || |||||| Sbjct 2742718 CAACAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCTGATTAC 2742659 Query 25176 AATATTCAAAAAG 25188 || || ||||||| Sbjct 2742658 AACATCCAAAAAG 2742646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433297179004340