Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4511 141 1e-28 seq5022 120 3e-22 seq5098 116 4e-21 >seq4511 Length=1767931 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||||||||| || || | || |||||||| || | |||||| | | ||||||||||| Sbjct 464550 CTTCGTCTCGCGAGATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCT 464609 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | |||||||| || | || ||||| ||| || || ||||| || || || ||||||| Sbjct 464610 TTAGCCAAAAAATGGCTGCGAAACTGCCACTGAAGAAGATACCCTCAACCGCCGCAAATG 464669 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | || | |||||||| ||| | ||| | | | ||||| ||||| |||||| | Sbjct 464670 CGACTACACGTTCGGGAAACGTAGCGCTCTCATGATTAATCCAATTTAATGCCCAAGTAG 464729 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 |||| ||| | | |||||| ||||| || || || ||||||| | |||||| Sbjct 464730 CTTTCTTCCTCACACAAGGAAGTGTCTCAATCGCATTAAATAAGAAATCTC 464780 Score = 123 bits (136), Expect = 3e-23 Identities = 155/212 (73%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || || || | || ||| ||||| |||||||| | ||| || || |||||||| Sbjct 465817 ATATAAGTTTCAATGAGCAAAGAGTACATCTCAGAATGAATATTTTCTATGGCAATTTGA 465876 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | ||||| | || | ||| ||||| |||||||| | ||| Sbjct 465877 AAGCCATAGAAACAACGTGCTTCGGGAATTTTCACCTCTTGGCTGAATCTCTCAATCAGA 465936 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| || ||||||||||| || ||||| || || || | ||| ||||| ||| Sbjct 465937 TTCTCATTAACGATACCATCGGAAGCGGCAAAGAATGCTAAGACATGAGAGATAAAGTGT 465996 Query 93542 TTCTCATCATCTTTAAGCTT---ATCCCAATC 93570 |||||||| || ||||| || |||||| Sbjct 465997 TTCTCATCGGAATTTAGCTTTTCATTCCAATC 466028 >seq5022 Length=6518063 Score = 120 bits (132), Expect = 3e-22 Identities = 81/88 (92%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 964942 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 965001 Query 126327 GTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||||||||||| |||||| || Sbjct 965002 GTTCGAACCCCACACCTGGCAAATTTTT 965029 >seq5098 Length=3754408 Score = 116 bits (128), Expect = 4e-21 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||| Sbjct 1847000 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATCTGGGAGCGTGG 1847059 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||| | |||||| || || Sbjct 1847060 GTTCGAACCCCACACTTAGCAAATTTTTTTT 1847090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556820177004640