Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5634 172 5e-38 seq5320 141 8e-29 seq4085 127 2e-24 >seq5634 Length=4821945 Score = 172 bits (190), Expect = 5e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||| | |||||||||||| | ||||| ||||| ||| | | Sbjct 1938475 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACGATTACTCTCGAAGTCGAAGCTTCA 1938416 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||||| || ||||| || || |||||||| |||||| Sbjct 1938415 GATACCATCGAAAATGTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAA 1938356 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||||||||| | || ||| | | || | || ||||||||| Sbjct 1938355 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAAC 1938296 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||||||||| | || |||||||| ||| | ||||||||| Sbjct 1938295 ATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGCGGAGGT 1938248 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||| | ||||||||||| ||||||||||||| ||| || | Sbjct 1938931 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTCT 1938872 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| || || |||||||| || || ||||| || || || Sbjct 1938871 GACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAG 1938812 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || |||||||||||||| | || |||| || || ||| Sbjct 1938811 CAACGTTTGATCTTTGCTGGTAAACAGTTAGAGGACGGTAGGACACTCTCGGACTATAAC 1938752 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||||||||| ||| | ||||| ||| |||| | || ||||| Sbjct 1938751 ATCCAAAAAGAATCTACCCTTCATTTGGTTCTGCGTCTTCGAGGAGG 1938705 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||| | ||||||||||| | ||||| ||||| ||| | | Sbjct 1938703 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTCA 1938644 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || ||||| ||||| || || || |||||||| |||||| Sbjct 1938643 GACACCATTGAAAACGTAAAGGCCAAAATCCAAGATAAAGAAGGAATTCCACCGGATCAA 1938584 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||||||||| | || ||| | | || | ||||||||||| Sbjct 1938583 CAGCGTTTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCCGATTACAAT 1938524 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||||||||| | || | ||| |||| | || ||||| Sbjct 1938523 ATCCAGAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGG 1938477 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || |||||||| |||| || ||||| ||| | | Sbjct 1939387 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTCG 1939328 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || ||||||||||| || ||||| ||||| || ||||| Sbjct 1939327 GACACCATTGAAAACGTAAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCGGATCAG 1939268 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| || | || ||| | | || |||| |||||||| Sbjct 1939267 CAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTACAAT 1939208 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||||||||| | || || ||| | || | || ||||| Sbjct 1939207 ATTCAAAAAGAATCCACACTTCACTTGGTTCTTCGTCTTCGAGGAGG 1939161 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || |||||||| |||| |||||||| ||| | | Sbjct 1939159 ATGCAAATCTTTGTGAAAACTCTCACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTCT 1939100 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| || || |||||||| || || ||||| || || || Sbjct 1939099 GACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAG 1939040 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || |||||||| || || | || |||| || || ||| Sbjct 1939039 CAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAAC 1938980 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||||||||| | || | ||| |||| | || ||||| Sbjct 1938979 ATCCAGAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGG 1938933 >seq5320 Length=807335 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| ||||| || || || |||| | ||||| || | | Sbjct 502335 ATGCAAATTTTCGTCAAAACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 502394 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 502395 GACACTATCGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGATCAG 502454 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| |||||| | || ||| |||||| | || || |||||| Sbjct 502455 CAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAC 502514 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| | ||||| |||||| | | ||||| ||| Sbjct 502515 ATTCAAAAAGAATCCACGTTGCATTTGGTTTTGAGGCTTCGCGGCGGT 502562 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || || || || |||| || ||||| || | | Sbjct 501879 ATGCAAATTTTCGTCAAGACATTGACAGGAAAGACAATCACGCTGGAAGTTGAGGCGTCA 501938 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 501939 GACACTATCGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGATCAG 501998 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| |||||| | || ||| |||||| | || || ||||| Sbjct 501999 CAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAT 502058 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||||||||| | ||||| ||| | || || || || ||| Sbjct 502059 ATTCAGAAAGAATCCACGTTGCATTTGGTTCTCCGTTTACGTGGTGGT 502106 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| | ||||||||||| | ||||| ||||| ||| | | Sbjct 502563 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATTACTCTGGAAGTCGAAGCGTCG 502622 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||||||||||||||||| || || || || || || Sbjct 502623 GACACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCAG 502682 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| ||||| | || || ||||| | || || || || Sbjct 502683 CAGAGGTTAATCTTCGCCGGGAAACAACTTGAAGACGGTCGCACACTTTCTGACTATAAT 502742 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| ||| | ||||| ||| | || || || || ||| Sbjct 502743 ATTCAAAAGGAATCTACCTTGCATTTGGTTCTCCGTTTACGTGGTGGT 502790 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| ||||| || || || |||| || ||||| || | | Sbjct 502107 ATGCAAATTTTTGTCAAAACATTAACAGGAAAGACCATCACGCTGGAAGTTGAGGCGTCA 502166 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| |||||||||||||| || || ||||| || ||||| Sbjct 502167 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCAG 502226 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| | || ||| ||||| | || || ||||| Sbjct 502227 CAGAGATTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTACAAT 502286 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| ||| ||||||| ||| | || | || || ||| Sbjct 502287 ATTCAAAAGGAATCTACCTTACATTTGGTTCTTCGTCTACGTGGTGGT 502334 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || || || || || | ||||||||||| || | | Sbjct 501195 ATGCAGATTTTTGTGAAGACATTGACTGGGAAGACCATAACTCTTGAAGTTGAGGCTTCT 501254 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||| || || || ||||| || |||||||| ||||| Sbjct 501255 GACACTATCGAGAATGTAAAAGCAAAGATCCAGGATAAGGAAGGCATTCCACCTGATCAG 501314 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || ||| | || ||| || ||| | || |||||||| Sbjct 501315 CAGCGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACCTTGTCTGATTACAAT 501374 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||| || | ||||| || | ||||||| || || Sbjct 501375 ATTCAGAAGGAATCTACTCTTCATTTGGTCCTCAGATTGCGTGGTGG 501421 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || || || || |||| | ||||| || | || Sbjct 501651 ATGCAAATTTTCGTCAAAACCCTGACAGGAAAGACCATCACATTGGAAGTTGAGGCGTCC 501710 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| |||||||||||||| || || ||||| || ||||| Sbjct 501711 GACACGATCGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCAG 501770 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| | || ||| ||||| | || || ||||| Sbjct 501771 CAGAGATTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTACAAT 501830 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||||||||| | ||||| ||| | || || || || ||| Sbjct 501831 ATTCAGAAAGAATCCACATTGCATTTGGTTCTCCGTTTACGTGGTGGT 501878 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| |||||| | || |||||||| | || || || || || | | Sbjct 503019 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCA 503078 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||||||||||| || || || ||||| ||||||||| Sbjct 503079 GACACGATCGAAAATGTAAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 503138 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || ||||| ||| |||| ||| || || | ||||| || || Sbjct 503139 CAAAGACTGATTTTCGCGGGCAAGCAGCTAGAAGATGGACGGACTTTATCCGACTATAAT 503198 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||| || || Sbjct 503199 ATTCAGAAAGAGTCTAC 503215 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || || || || |||| | ||||| || | | Sbjct 502791 ATGCAAATTTTCGTCAAGACATTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCG 502850 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| |||||||| |||||||| || || || || ||||| Sbjct 502851 GACACGATCGAGAATGTTAAAGCCAAAATTCAGGACAAGGAAGGAATACCTCCAGATCAG 502910 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| ||||| | || ||| || || | || |||||||| Sbjct 502911 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGTACACTTTCTGATTACAAT 502970 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || |||||||| | ||||| |||||| | | ||||| ||| Sbjct 502971 ATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGGCTTCGCGGCGGT 503018 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| | || || || || |||| | ||||| || | | Sbjct 501423 ATGCAGATTTTCGTCAAAACCCTGACAGGAAAGACCATCACATTGGAAGTTGAGGCGTCG 501482 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| |||||||||||||| || || || || || ||||| Sbjct 501483 GACACGATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCCCCGGATCAG 501542 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || || | || ||| ||||| | || || |||||| Sbjct 501543 CAGAGATTGATCTTCGCTGGAAAGCAACTTGAAGATGGTCGCACACTTTCTGACTACAAC 501602 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||||||||| Sbjct 501603 ATTCAGAAAGAATCCAC 501619 >seq4085 Length=6844556 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || |||||||| | || || || || || || | Sbjct 2742835 ATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACTATTACCCTCGAGGTAGAGGCCTCT 2742776 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || || ||||||||||| |||||||| |||||| Sbjct 2742775 GATACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCACCAGATCAA 2742716 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||||||| | |||||| ||||| | || ||||||||| Sbjct 2742715 CAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCTGATTACAAC 2742656 Query 22399 ATTCAAAAAG 22408 || ||||||| Sbjct 2742655 ATCCAAAAAG 2742646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419698146321340