Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq5320 102 6e-17 seq5634 100 2e-16 >seq5320 Length=807335 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||||||||| || || ||||| || ||||| || || || Sbjct 502107 ATGCAAATTTTTGTCAAAACATTAACAGGAAAGACCATCACGCTGGAAGTTGAGGCGTCA 502166 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| |||||| || ||||| || | || | || Sbjct 502167 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCAG 502226 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 |||||| | ||||| ||||| |||||||| |||||| | | ||| | | || |||| Sbjct 502227 CAGAGATTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTT--CTGACTACA 502284 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||| ||||||||||| | ||| |||| | ||| |||| || || Sbjct 502285 ATATTCAAAAGGAATCTACCTTACATTTGGTTCTTCGTCTACGTGGTGG 502333 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| | || || ||||| ||||| |||| || || || Sbjct 503019 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCA 503078 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| |||||| |||||||| || | ||| | ||| Sbjct 503079 GACACGATCGAAAATGTAAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 503138 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || || || ||||| || ||||||||| | ||| | |||| || ||| Sbjct 503139 CAAAGACTGATTTTCGCGGGCAAGCAGCTAGAAGATGGACGGACTTTATCCGACTATAAT 503198 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATAT 22064 |||||||| || ||||| |||||| | ||| | || | |||| ||| || Sbjct 503199 ATTCAGAAAGAGTCTACACTTCATCTTGTACTTCGACTTAGAGGTGGAGAT 503249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || ||||| || || || ||||| || ||||| || || | Sbjct 502791 ATGCAAATTTTCGTCAAGACATTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCG 502850 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || |||| |||||| || || || || ||||| | | || Sbjct 502851 GACACGATCGAGAATGTTAAAGCCAAAATTCAGGACAAGGAAGGAATACCTCCAGATCAG 502910 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 ||||| | ||||| || || |||||||| |||||| | | ||| | | ||||||| Sbjct 502911 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGTACACTTT--CTGATTACA 502968 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||||||||||||||| || | ||| |||| || Sbjct 502969 ATATTCAGAAGGAATCCACATTGCATTTGGTTTT 503002 Score = 82.4 bits (90), Expect = 5e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 21963 ATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAG 22022 ||||||||||| || || || |||||| | || || | |||||||||||||||||| Sbjct 501324 ATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACCTTGTCTGATTACAATATTCAGAAG 501383 Query 22023 GAATCTACTCTTCATATGGT 22042 ||||||||||||||| |||| Sbjct 501384 GAATCTACTCTTCATTTGGT 501403 >seq5634 Length=4821945 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | ||||| |||||||| ||| | ||| ||||| | Sbjct 1939387 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTCG 1939328 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| |||||| ||||||||||| | || | || Sbjct 1939327 GACACCATTGAAAACGTAAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCGGATCAG 1939268 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || || ||||||||||| ||||| |||||| | |||| | | ||||||||| Sbjct 1939267 CAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTACAAT 1939208 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || ||||| || ||||| |||| | ||| | ||||||||| Sbjct 1939207 ATTCAAAAAGAATCCACACTTCACTTGGTTCTTCGTCTTCGAGGAGGA 1939160 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | ||||| | || || ||||||||||| | ||| ||||| | Sbjct 1938704 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 1938645 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | | ||| ||||| |||||||| || | || | || Sbjct 1938644 AGACACCATTGAAAACGTAAAGGCCAAAATCCAAGATAAAGAAGGAATTCCACCGGATCA 1938585 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||| | | || || || ||||||||||| |||||| | |||| | |||||||||| Sbjct 1938584 ACAGCGTTTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCCGATTACAA 1938525 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||| ||||| ||||| || ||||| |||| | ||| | ||||||||| Sbjct 1938524 TATCCAGAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGGA 1938476 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || || |||||||| ||| | || |||||| | Sbjct 1939615 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 1939556 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||||| || ||||| ||| | ||| | | || Sbjct 1939555 GACACTATCGAGAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 1939496 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | ||||||||||| ||||||||||| ||| | |||| | | || ||||| Sbjct 1939495 CAACGTTTGATCTTTGCTGGAAAACAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 1939436 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||||||||| |||||| | || | ||| |||| ||||| Sbjct 1939435 ATCCAGAAGGAATCTACGCTTCATCTTGTTCTGCGTCTACGTGGAGG 1939389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358099327925944