Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq5634 136 3e-27 seq5320 122 7e-23 seq4085 95.1 1e-14 >seq5634 Length=4821945 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || |||| |||||||| || | || ||||||||||| ||||||||||| Sbjct 1938246 ATACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCA 1938305 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | |||||| |||||||| || ||| | || ||||||||||| ||||| Sbjct 1938306 GAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGT 1938365 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| || || || | | ||| | ||| || | | |||| Sbjct 1938366 GGAATTCCTTCTTTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCG 1938425 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||| ||||| |||||||| || || || ||||| Sbjct 1938426 ACTTCGAGAGTAATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938475 Score = 129 bits (142), Expect = 5e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || |||||||||||||| |||||||| | ||| | |||||| Sbjct 1939178 AACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTTCTGCCATCTTC 1939237 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 |||||| || ||||| | || |||||||| || ||||| ||||| || ||||| || Sbjct 1939238 AAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATCTTG 1939297 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| || |||| | ||||| |||||| | | |||||| || | ||| | ||||| Sbjct 1939298 AATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTTTT 1939357 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || ||||| |||||||| ||||||||| || Sbjct 1939358 ACCCGTAAGAGTCTTTACAAAGATCTGCATGCCT 1939391 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || ||| ||||| | |||||||||||||| ||||| || || Sbjct 1938702 ATTCCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCC 1938761 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | || || | ||||||||||| |||| | ||| || ||||| ||| Sbjct 1938762 GAGAGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGA 1938821 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| ||||| ||||| | ||| | ||||| | || ||| Sbjct 1938822 GGAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCA 1938881 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| |||||||| || || || ||||| Sbjct 1938882 ACTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938931 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | || ||| | ||| | ||||||||| || || |||||||| || Sbjct 1939386 ATGCCTCCACGTAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCA 1939445 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||| || |||||||| ||||| |||| | ||| || || || ||| Sbjct 1939446 GAAAGAGTTCTGCCATCCTCTAGTTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGA 1939505 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| || || ||| | | || | ||||| | | ||| Sbjct 1939506 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTCTCGATAGTGTCAGAAGCTTCC 1939565 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | ||||| || || || ||||||||||| || |||||| Sbjct 1939566 ACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCATG 1939616 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || ||| | || | || |||||||| || ||||| || || Sbjct 1938930 ATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCT 1938989 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | ||||| | |||||||||||| |||| | ||| || ||||| ||| Sbjct 1938990 GAGAGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 1939049 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| ||||| ||||| | ||| | ||||| | | ||| Sbjct 1939050 GGAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCA 1939109 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || || |||||||| ||||| || ||||| Sbjct 1939110 ACTTCAAGGGTGATAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 1939159 >seq5320 Length=807335 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | | ||| ||||||| |||||||| |||||||| ||||| || Sbjct 502336 ATACCACCACGTAGACGAAGAACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCA 502277 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||||||||||||||| |||||| |||| | | ||| || ||||| Sbjct 502276 GAAAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGG 502217 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||| || || | | ||| | ||||| | | || Sbjct 502216 GGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCA 502157 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || | ||||| |||||||| ||||| Sbjct 502156 ACTTCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||||| | | ||| ||||| | |||||||| |||||||| || || || Sbjct 502792 ATACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTTTGAATATTATAGTCA 502733 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| |||||||||||||| || ||| |||| | | ||| ||||||||| Sbjct 502732 GAAAGTGTGCGACCGTCTTCAAGTTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGA 502673 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||| || ||| | | || | ||||| | | |||| Sbjct 502672 GGGATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCG 502613 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| ||||| || ||||| |||||||| ||||| Sbjct 502612 ACTTCCAGAGTAATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 502563 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||||| | | ||| ||||| | || |||||||| ||||| ||||| || Sbjct 501880 ATACCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCA 501821 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||||||||||||||| |||||| |||| | | ||| || ||||| Sbjct 501820 GAAAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGG 501761 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||| || || | | || | ||||||| | || Sbjct 501760 GGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCA 501701 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || ||||| ||||| || ||||| ||||| Sbjct 501700 ACTTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATTTGCAT 501651 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| || || |||||||| ||||| | || ||||| || ||||| |||||||| Sbjct 503020 ATACCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCA 502961 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||||||||||||||| || ||| |||| | | ||| || || ||| Sbjct 502960 GAAAGTGTACGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGA 502901 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || || ||||| ||||| ||| ||| | |||| | | || | ||||| | | || Sbjct 502900 GGTATTCCTTCCTTGTCCTGAAT-TTTGGCTTTAACATTCTCGATCGTGTCCGACGCCTC 502842 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || |||| || || || ||||| ||||| Sbjct 502841 AACTTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 502791 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| | ||| | || ||||| | |||||||| || ||||| |||||||| Sbjct 501424 ATTCCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCA 501365 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| |||||| || || || ||||| |||| | |||||| || || || Sbjct 501364 GACAAGGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGT 501305 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || |||||| ||||| | || | ||||| | | || Sbjct 501304 GGAATGCCTTCCTTATCCTGGATCTTTGCTTTTACATTCTCGATAGTGTCAGAAGCCTCA 501245 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || || | || | || || || |||| || || |||||||||||||||| Sbjct 501244 ACTTCAAGAGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCATGG 501193 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| || || |||||||| ||||| | ||| |||||||||||||||||||| || Sbjct 502564 ATACCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCA 502505 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| || ||||| || ||| |||| | | ||| || ||||| Sbjct 502504 GAAAGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGT 502445 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || || ||||| ||||| ||| ||| | |||| | | || | ||||| | | || Sbjct 502444 GGGATTCCTTCCTTGTCTTGAAT-TTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTC 502386 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || | ||||| || ||||| ||||| Sbjct 502385 AACTTCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | || |||||||| ||||||||||| || Sbjct 501652 ATTCCACCACGTAGACGAAGGACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCA 501593 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| |||||||||||| || |||||| |||| | | ||| || ||||| Sbjct 501592 GAAAGTGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGG 501533 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||| || ||| | | || | ||||| | | || Sbjct 501532 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATCGTGTCCGACGCCTCA 501473 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || ||||| ||||| || ||||||||||| Sbjct 501472 ACTTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATCTGCAT 501423 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| ||||| || || ||| | ||| || |||||| || || || || Sbjct 503215 GTAGACTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCTTCTAGCTGCTTGCCC 503156 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || | ||||| || ||||||||||||||||| || ||| || ||| Sbjct 503155 GCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTTCGCCTTT 503096 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||||| | | ||||| |||| || | ||||| || || |||||| Sbjct 503095 ACATTTTCGATCGTGTCTGAAGCCTCGACCTCCAGCGTAATAGTTTTACCAGTGAGAGTT 503036 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 503035 TTGACAAAAATCTGCAT 503019 >seq4085 Length=6844556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 ||||||| ||||||||||| || ||| || ||| || || ||||| || ||| ||| Sbjct 2742646 CTTTTTGGATGTTGTAATCAGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 2742705 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 |||| |||||||| || || ||||| || || ||||| ||||| || | | | Sbjct 2742706 TGAGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 2742765 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 | | ||| || | || || || || | ||| | ||||| || || || ||||| || | Sbjct 2742766 CGATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCCGTGAGGGTTTTCACGA 2742825 Query 114373 AAATCTGCATGG 114384 | |||||||||| Sbjct 2742826 AGATCTGCATGG 2742837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420104517415632