Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5320 127 2e-24 seq5634 120 3e-22 seq4085 95.1 1e-14 seq5665 93.3 4e-14 >seq5320 Length=807335 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||| | || | || | ||| | ||| |||||||||||||||||||| || | Sbjct 502562 ACCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGA 502503 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| ||||| || ||||| | || | | |||||| || || || Sbjct 502502 AAGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGG 502443 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||| || ||||| ||||| |||||| || ||| | || || || || | Sbjct 502442 GATTCCTTCCTTGTCTTGAATTTTG-GCTTTAACATTCTCGATAGTGTCTGACGCCTCAA 502384 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | |||||| || || || ||||| |||||||||||||| Sbjct 502383 CTTCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Score = 120 bits (132), Expect = 3e-22 Identities = 157/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || |||||||| ||||||||||| || | | ||||| | || Sbjct 501635 AAGGACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGTGTGCGACCATC 501576 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| ||||| || || | || | | |||||| || || || ||||||||||| || Sbjct 501575 TTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTC 501516 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | |||| ||||| ||| ||| | || || || || ||||| | || | || Sbjct 501515 TTG-AATTTTAGCTTTGACATTCTCGATCGTGTCCGACGCCTCAACTTCCAATGTGATGG 501457 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| || |||| ||||| |||||||| |||||| Sbjct 501456 TCTTTCCTGTCAGGGTTTTGACGAAAATCTGCATT 501422 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || || | ||| | || |||||||| ||||| ||||| || | Sbjct 501878 ACCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGA 501819 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | |||||||| || || || || | || | | |||||| || || || Sbjct 501818 AAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGG 501759 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||||||| ||||| ||||| ||| ||| ||| | || || || || || Sbjct 501758 AATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCAAC 501699 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | |||||| || |||| ||||| ||||||||||||||| Sbjct 501698 TTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATTTGCATT 501650 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || || | ||| | || ||||| |||||||| || || || | Sbjct 502790 ACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTTTGAATATTATAGTCAGA 502731 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||||||||| || || ||||| | || | || ||||||||| ||||| Sbjct 502730 AAGTGTGCGACCGTCTTCAAGTTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGAGG 502671 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||| || ||||| ||||| ||||| ||| ||| | || || || || | Sbjct 502670 GATTCCTTCCTTGTCTTGAATTTTG-GCTTTGACATTCTCGATCGTGTCCGACGCTTCGA 502612 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | || || ||||| | ||||| || ||||||||||| Sbjct 502611 CTTCCAGAGTAATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 502563 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||| | || | || | ||| | || ||||| || ||||| |||||||| | Sbjct 503018 ACCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCAGA 502959 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | |||||||| || || ||||| | || | || |||||| || ||||| Sbjct 502958 AAGTGTACGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 502899 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||| || || || ||||| |||||| || ||| | || || || || | Sbjct 502898 TATTCCTTCCTTGTCCTGAATTTTG-GCTTTAACATTCTCGATCGTGTCCGACGCCTCAA 502840 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | |||||| || ||||| || || |||||||||||||| Sbjct 502839 CTTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 502791 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || || | ||| | ||| |||||||| ||||| ||||| || | Sbjct 502106 ACCACCACGTAAACGGAGAACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGA 502047 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| ||||| || ||||| | || | | |||||| || || || Sbjct 502046 AAGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGG 501987 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||| || ||||| ||||| |||||| || ||| | || || || || | Sbjct 501986 GATTCCTTCCTTGTCTTGAATTTTG-GCTTTAACATTCTCGATAGTGTCTGACGCCTCAA 501928 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | ||||| || ||||| || || |||||||||||||| Sbjct 501927 CTTCCAGCGTGATTGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 501879 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || ||||| |||||||| ||||| || | | ||||| | || Sbjct 502319 AAGAACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGACCATC 502260 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| || || || || | || | | |||||| || || |||||||||||||| || Sbjct 502259 TTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTC 502200 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| ||| ||| || | || || || || ||||| | || | ||| Sbjct 502199 TTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAACTTCCAGCGTGATGGT 502140 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || || ||||| || ||||||||||| Sbjct 502139 CTTTCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 || ||| || ||||||| || || ||||| ||||| || || || | | || || | Sbjct 503234 TCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCC 503175 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| ||||||||||| || |||| || | || || ||||||||||| |||||||| Sbjct 503174 ATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTT 503115 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| ||||| ||||||| || | || || || || || || | || | Sbjct 503114 ATCTTGAATTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGACCTCCAGCGTAAT 503055 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || || | |||||| || ||||| ||||| Sbjct 503054 AGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 503019 >seq5634 Length=4821945 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || | |||| || | || ||||||||||| ||||||||||| | Sbjct 1938248 ACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 1938307 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| || || |||||||| |||| || ||||| || || || || Sbjct 1938308 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 1938367 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||||||| || || ||||| ||| ||| || | ||||| || || || Sbjct 1938368 AATTCCTTCTTTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCGAC 1938427 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | ||| | || || ||||| | |||||| ||||| ||||||||| Sbjct 1938428 TTCGAGAGTAATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938476 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || ||||||||||| ||||| || || | || || | |||| Sbjct 1938720 AGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCGAGAGTGTCCTACCGTCC 1938779 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||| || || ||| | || | || |||||||| |||||||| |||||||| ||| Sbjct 1938780 TCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTTGTCT 1938839 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||| || | ||| ||| ||| || ||||| | ||| | ||| Sbjct 1938840 TGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGAGTGATGGTT 1938899 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||| | |||||| ||||| ||||||||| Sbjct 1938900 TTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938932 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||| |||||||| | || || | | |||||||| ||| Sbjct 1939185 TGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTTCTGCCATCTTCAAGTTGC 1939244 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| ||| |||| || |||||||| || || |||||||| ||||| ||||| ||||| Sbjct 1939245 TTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATCTTGAATTTTG 1939304 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 |||||| || | || || || || ||||| | || | ||| || || || Sbjct 1939305 GCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTTTTACCCGTA 1939364 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | ||| ||||| || || ||||| Sbjct 1939365 AGAGTCTTTACAAAGATCTGCAT 1939387 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || |||||||| || || |||||||| | | || | | ||| Sbjct 1938492 AGAACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCT 1938551 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || |||||||| |||| | ||||| || || || |||||||||||||| ||| Sbjct 1938552 TCCAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCTTTATCT 1938611 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| |||||| || | || || || || ||||| | ||| | ||| Sbjct 1938612 TGGATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGAGTAATGGTT 1938671 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||| | |||||| ||||| ||||||||| Sbjct 1938672 TTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938704 >seq4085 Length=6844556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 ||||||| ||||||||||| | | ||||| | || || ||||| |||||||| | | Sbjct 2742646 CTTTTTGGATGTTGTAATCAGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 2742705 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 |||| ||||| || || || |||||||| || || || || || || ||| ||| || Sbjct 2742706 TGAGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 2742765 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | |||||| ||| || || || | || | || || || || | ||||| |||| Sbjct 2742766 CGATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCCGTGAGGGTTTTCACGA 2742825 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 2742826 AGATCTGCAT 2742835 >seq5665 Length=3828390 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 154031 AAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTC 154090 ||| || || | ||||||||| | |||||| | |||||| || |||| || | ||||| Sbjct 3267896 AAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCAATGGATTC 3267955 Query 154091 GTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTT 154150 ||| || ||||| ||||| || || | || || |||||| || | || | || || Sbjct 3267956 GTTATTCCCTAAAATTTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGCGAATT 3268015 Query 154151 TCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGG 154210 || | ||||| || ||||| | || || | |||||| ||| || || || || Sbjct 3268016 TCTTACTCCGTGCTTCGCAATCTTCGCCTTCAATTTATCCCAATCCCATAAATTTGTCGG 3268075 Query 154211 TTGCACGTTCCACATGTCGTATTG 154234 || ||||||||||| || ||||| Sbjct 3268076 TTTAACGTTCCACATATCATATTG 3268099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499608350911840