Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5634 111 2e-19 seq5320 109 5e-19 >seq5634 Length=4821945 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| ||| | ||| | | || ||||| || ||||||||||| Sbjct 1939388 GCCTCCACGTAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAGA 1939447 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| | || | ||||| |||||||| || | | |||| | ||| || || || |||| Sbjct 1939448 AAGAGTTCTGCCA-TCCTCTAGTTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAG 1939506 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | |||||||||||||| |||||| ||| | | || | ||||| | | |||| Sbjct 1939507 GAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTCTCGATAGTGTCAGAAGCTTCCA 1939566 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||||| ||||| || ||||||||||| || |||||| Sbjct 1939567 CCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCATG 1939616 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGA 138458 || |||||||| || | | || || ||||| |||||||| || | ||| | || | Sbjct 1938261 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCA 1938320 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 || || |||||||| |||| | || ||||||||||| ||||| || || |||||||| Sbjct 1938321 -TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTT 1938379 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| |||||| || | | ||| | ||| || | | || || |||| || | Sbjct 1938380 GTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCGACTTCGAGAGTAAT 1938439 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||| || |||||||| || || || ||||| Sbjct 1938440 CGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938475 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||||| ||| ||||| | | | || || ||||| ||||| ||||| Sbjct 1938705 CCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCGAG 1938764 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | |||||| | |||||||| | | |||| | ||| || ||||| ||||| Sbjct 1938765 AGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGA 1938824 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| || ||||| | ||| | ||||| | | || || Sbjct 1938825 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 1938884 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || |||||||| || || || ||||| Sbjct 1938885 TCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938931 >seq5320 Length=807335 Score = 109 bits (120), Expect = 5e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || ||||| | ||| ||||| | | | || ||||||||||| || ||||| Sbjct 502789 CCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTTTGAATATTATAGTCAG-- 502732 Query 138448 ATAGTACGCGA--GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| |||| ||| || |||||||| |||| |||||| | ||| |||||||||| Sbjct 502731 AAAGTGTGCGACCGTCTTCAAGTTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGAG 502672 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 | || ||||| ||||| ||| |||| | ||| | | || | ||||| | || || Sbjct 502671 GGATTCCTTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCG 502613 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | |||||||| || || ||||| |||||||| ||||| Sbjct 502612 ACTTCCAGAGTAATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 502563 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||| || |||||| | ||| || || || || || || || | Sbjct 503212 GACTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCTTCTAGCTGCTTGCCCGCG 503153 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAA 138539 | || || | ||||| || ||||| || |||||||| || ||| |||| | |||| Sbjct 503152 AAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCT-TGAATTTTCGCCTTTAC 503094 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||||| | | ||| ||||| | ||| | ||||||||||| |||||||| Sbjct 503093 ATTTTCGATCGTGTCTGAAGCCTCGACCTCCAGCGTAATAGTTTTACCAGTGAGAGTTTT 503034 Query 138600 TACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 503033 GACAAAAATCTGCAT 503019 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||||| | | || ||||||||||| |||||||| Sbjct 502333 CCACCACGTAGACGAAGAACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAG-- 502276 Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| |||| || || |||||||| || | |||| | | ||| || ||||| | Sbjct 502275 AAAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGG 502216 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 | || ||||||||||| ||| |||| | || | | ||| | ||||| | || ||| Sbjct 502215 GAATTCCTTCTTTGTC-TTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCA 502157 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | ||| | || || || || | ||||| |||||||| ||||| Sbjct 502156 ACTTCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | | |||||| ||||| | | || || ||||||||||||||||| Sbjct 502561 CCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAA 502502 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || ||||| ||||| |||| |||| | | ||| || ||||| || Sbjct 502501 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 502442 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||||| | || | ||||| | || ||| || Sbjct 502441 ATTCCTTCCTTGTC-TTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAAC 502383 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || || | ||||| || ||||| ||||| Sbjct 502382 TTCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496226197657920