Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq5634 152 4e-32 seq5320 109 4e-19 >seq5634 Length=4821945 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | || ||||||||| || || || || |||||||| ||||||||||| Sbjct 1938249 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 1938308 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| | ||||||||| ||| | |||| ||||||||| || |||| Sbjct 1938309 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 1938368 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| |||||| || ||| |||| || ||||| | ||| || Sbjct 1938369 ATTCCTTCTTTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCGACT 1938428 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||| |||||||| || |||||||| || || |||||||| Sbjct 1938429 TCGAGAGTAATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938475 Score = 136 bits (150), Expect = 3e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || ||||| || || ||||||||| ||| |||| | ||||| | |||| Sbjct 1938501 TGAAGTGTGGATTCTTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCCAGTTGT 1938560 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | |||||||||||||| || |||||||||||| || || |||||| Sbjct 1938561 TTGCCGGCGAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGGATTTTG 1938620 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||||| |||| || || || | ||| || || | |||||||||||||| || Sbjct 1938621 GCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGAGTAATGGTTTTACCGGTG 1938680 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 |||||||| || || |||||||| Sbjct 1938681 AGAGTTTTCACGAAGATTTGCAT 1938703 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||||||||| |||||||| ||||| || || ||| | || |||| || Sbjct 1938722 AACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCGAGAGTGTCCTACCGTCCTC 1938781 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||| ||||| ||||| | |||||||| || ||||| ||||| ||||| ||||| Sbjct 1938782 TAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTG 1938841 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || |||||| ||||||| || || ||| || || | || |||||||| Sbjct 1938842 GATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGAGTGATGGTTTT 1938901 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || |||||||| || || |||||||| Sbjct 1938902 ACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938931 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| || || |||||||| || |||||||| |||| |||| | ||||| Sbjct 1939178 AACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTTCTGCCATCTTC 1939237 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| |||||||| | |||| |||||| || || |||||||| || || || Sbjct 1939238 AAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATCTTG 1939297 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||||| ||||| |||| || || || | ||| || || | ||| |||||||| Sbjct 1939298 AATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTTTT 1939357 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || ||||| |||||||| || ||||| Sbjct 1939358 ACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| ||||| || || || |||||||| || ||| |||| | || || Sbjct 1939406 AACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTC 1939465 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || |||||| ||||| | |||||||| || || || ||||| ||||| ||||| Sbjct 1939466 TAGTTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTTG 1939525 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| ||| ||| | || ||||| || | ||| || || | ||| |||||||| Sbjct 1939526 GATTTTAGCTTTGACATTCTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTTT 1939585 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| |||||||| Sbjct 1939586 TCCAGTGAGGGTTTTTACAAAGATTTGCAT 1939615 >seq5320 Length=807335 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | ||| ||||| | |||||| || ||||| || || || || Sbjct 502789 CCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTTTGAATATTATAGTCAGAA 502730 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | |||||| || ||| | || || | ||| ||||| || Sbjct 502729 AGTGTGCGACCGTCTTCAAGTTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGG 502670 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||||||| ||| ||| | || || || || ||| || Sbjct 502669 ATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACT 502610 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||| |||||||| || || ||||| ||||||||||||||| Sbjct 502609 TCCAGAGTAATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCATA 502562 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 || ||||| ||||| | || || |||||||| |||||||| || || | | | Sbjct 502549 CTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGGCCA 502490 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | ||||| || ||| | ||||| | ||| || || ||| |||||||||||| Sbjct 502489 TCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTG 502430 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||||||| ||| ||| | || ||||| || || || || || || ||| Sbjct 502429 TCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAACGTGATG 502370 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| | ||||| || |||||||||||| Sbjct 502369 GTCTTTCCTGTTAATGTTTTGACGAAAATTTGCATA 502334 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||||||| | || |||||||| ||||| || || || || |||||||| | Sbjct 501421 CCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCA--G 501364 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| | || || ||||| | ||||||||||| || || || Sbjct 501363 ACAAGGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTG 501304 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||| |||||||| || || ||||| ||||||| | || ||||| || | || Sbjct 501303 GAATGCCTTCCTTATCCTGGATCTTTGC-TTTTACATTCTCGATAGTGTCAGAAGCCTCA 501245 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | || ||||| || || |||| || || |||||||| ||||| Sbjct 501244 ACTTCAAGAGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 501195 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | ||| ||||| | || || ||||| || || ||||| || Sbjct 501877 CCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAA 501818 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | |||||| |||||| | ||||| | ||| || || ||| Sbjct 501817 AGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGA 501758 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| ||||||| || ||| | || || || ||| || || Sbjct 501757 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCAACT 501698 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || |||||||| ||||| || ||||||||||| Sbjct 501697 TCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATTTGCAT 501651 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| | |||||| || ||||| || ||||| || || | | | ||||| Sbjct 502316 AACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTC 502257 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| |||||| | ||||| | ||| || || ||||||||||| ||||| Sbjct 502256 AAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTG 502197 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||||| || ||| |||| || || || || || || | || ||||| || Sbjct 502196 AATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAACTTCCAGCGTGATGGTCTT 502137 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| | ||||| ||||||||||||||| Sbjct 502136 TCCTGTTAATGTTTTGACAAAAATTTGCATA 502106 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 || ||||| ||||| | || || || || || || |||||||| || | | | Sbjct 503005 CTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCAGAAAGTGTACGACCA 502946 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | |||||| || ||| | ||||| | ||| || || || |||||||||||| Sbjct 502945 TCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGTATTCCTTCCTTG 502886 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||||||| ||| ||| | || || || || || || || || || ||| Sbjct 502885 TCCTGAATTTTGGCTTTAACATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTGATG 502826 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||||| || || || |||||||||||| Sbjct 502825 GTCTTTCCTGTCAATGTCTTGACGAAAATTTGCATA 502790 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | ||| ||||| | || || ||||| || || ||||| || Sbjct 502105 CCACCACGTAAACGGAGAACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGAA 502046 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | ||||| || ||| | ||||| | ||| || || ||| Sbjct 502045 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 501986 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||||||| ||| ||| | || ||||| || || || Sbjct 501985 ATTCCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACT 501926 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || || || ||||||| || || || |||||||||||| Sbjct 501925 TCCAGCGTGATTGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCATA 501878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357366580047260