Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5320 131 2e-25 seq5634 114 1e-20 seq4085 113 4e-20 >seq5320 Length=807335 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || |||| | |||||||| | ||||| || || |||||||||||||| Sbjct 501422 TCCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAGA 501363 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| || ||||| |||||||| ||||||| ||||||||||| || || Sbjct 501362 CAAGGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGG 501303 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||| ||| ||| || ||||| | | |||| ||||| | | ||| | Sbjct 501302 AATGCCTTCCTTATCCTGGATCTT-TGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAA 501244 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| | || | || || || |||| || || |||||||||||||||| Sbjct 501243 CTTCAAGAGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCATGG 501193 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| || | |||||||||| ||||| || |||||||||||||| || Sbjct 502333 CCACCACGTAGACGAAGAACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAA 502274 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || |||||||||||| ||||||||| ||||||||| || || Sbjct 502273 AGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGA 502214 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| ||||| ||||| | ||||| ||||| | ||| ||| Sbjct 502213 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAACT 502154 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || | ||||| |||||||| ||||| Sbjct 502153 TCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| ||||| || | |||||||| | || || ||||| ||||||||||| || Sbjct 501877 CCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAA 501818 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || |||||||||||| ||||||||| ||||||||| || || Sbjct 501817 AGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGA 501758 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| ||||| ||||| | |||| ||||| | ||| ||| Sbjct 501757 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCAACT 501698 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || ||||| ||||| || ||||| ||||| Sbjct 501697 TCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATTTGCAT 501651 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| ||||| || | |||||||| | ||||| || ||||||||||| || || Sbjct 502789 CCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTTTGAATATTATAGTCAGAA 502730 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || || ||||| || ||| |||| || | |||||| || ||||| Sbjct 502729 AGTGTGCGACCGTCTTCAAGTTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGG 502670 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTC-TCGA 127064 || || ||||||| | ||| ||| || |||| | |||| ||||||| || | |||| Sbjct 502669 ATTCCTTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCG-ACGCTTCGA 502612 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| ||||| || ||||| |||||||| ||||| Sbjct 502611 CTTCCAGAGTAATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 502563 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126885 CTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGC 126944 ||||||| | | ||| | || | ||| | ||||||||||| |||||||| || ||| Sbjct 503247 CTCCACCTCTAAGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGG 503188 Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004 | || || ||| |||||||| || || ||| | |||| || || |||||||||| Sbjct 503187 ATAAAGTCCGTCCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAG 503128 Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 | ||||| || || || |||||| ||| | | ||||| ||||| | | ||||| Sbjct 503127 GAATGCCTTCTTTATCTTGAATTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGA 503068 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | ||||| || || |||||||| |||||||||||||| Sbjct 503067 CCTCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 503019 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| || | |||| ||| | || || ||||| ||||| ||||| || Sbjct 501650 TCCACCACGTAGACGAAGGACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCAGA 501591 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| ||| || || || ||||||||| ||||||||| ||||||||| || || Sbjct 501590 AAGTGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGG 501531 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || ||||| ||| ||| |||| || | |||| ||||||| ||| | Sbjct 501530 GATTCCTTCTTTGTCT-TGAATTTTAGCTTTGACATTCTCGATCGTGTCCGACGCCTCAA 501472 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || || || ||||| ||||| || ||||||||||| Sbjct 501471 CTTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATCTGCAT 501423 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| ||||| || | |||||||| | ||| || ||||| ||||||||||| || Sbjct 502105 CCACCACGTAAACGGAGAACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGAA 502046 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||||||||| ||| ||||||||| ||||||||| || || Sbjct 502045 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 501986 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||| | ||| ||| || || | | |||| ||||| | ||| || Sbjct 501985 ATTCCTTCCTTGT-CTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAAC 501927 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || |||| || || || ||||| ||||| Sbjct 501926 TTCCAGCGTGATTGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 501879 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | | ||| |||||||| | || || || || |||||||||||||| Sbjct 503017 CCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCAGAA 502958 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || || |||||||| ||| ||||||| | ||||||||| |||||| Sbjct 502957 AGTGTACGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGT 502898 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| ||| || || | | |||| ||||||| ||| || Sbjct 502897 ATTCCTTCCTTGTCC-TGAATTTTGGCTTTAACATTCTCGATCGTGTCCGACGCCTCAAC 502839 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || |||| || || || ||||| ||||| Sbjct 502838 TTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 502791 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | | ||| |||||||| | ||| || ||||||||||| ||||| || Sbjct 502561 CCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAA 502502 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||||||||| ||| ||||||||| ||||||||| || || Sbjct 502501 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 502442 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||| | ||| ||| || || | | |||| ||||| | ||| || Sbjct 502441 ATTCCTTCCTTGT-CTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAAC 502383 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || || | ||||| || ||||| ||||| Sbjct 502382 TTCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 >seq5634 Length=4821945 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || |||||||||||||||||||| | || | ||| || Sbjct 1939179 ACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTTCTGCCATCTTCA 1939238 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || || ||||| | |||| ||||||||||| || || || ||||| || || Sbjct 1939239 AGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATCTTGA 1939298 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||| | | ||| | |||||||| | |||||||||| ||| | ||||| Sbjct 1939299 ATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTTTTA 1939358 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || ||||| |||||||| ||||||||| || Sbjct 1939359 CCCGTAAGAGTCTTTACAAAGATCTGCATGCCT 1939391 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || |||| |||| || | ||| | |||||| || || || || ||||| || Sbjct 1939389 CCTCCACGTAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAGAA 1939448 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| ||||| ||||||||||| ||||||| || |||||||| ||||| Sbjct 1939449 AGAGTTCTGCCATCCTCTAGTTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 1939508 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| |||||| |||| | |||| ||||| | | || || Sbjct 1939509 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTCTCGATAGTGTCAGAAGCTTCCACC 1939568 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||||| || || || ||||||||||| || |||||| Sbjct 1939569 TCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCATG 1939616 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| |||| || | || || ||||| || |||||||||||| Sbjct 1938476 TCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCGGA 1938535 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| || || ||||| || ||| | ||||| ||||| ||||| || || Sbjct 1938536 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGATCCGGTGG 1938595 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || || |||||| ||| | | ||| | |||||| | | ||||| Sbjct 1938596 AATTCCTTCTTTATCTTGGATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGAC 1938655 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | ||||| ||||| |||||||| || || || ||||| Sbjct 1938656 TTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938703 >seq4085 Length=6844556 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 ||||||| || |||||||| || ||||| ||| || |||||||| || ||| ||| Sbjct 2742646 CTTTTTGGATGTTGTAATCAGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 2742705 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 | | |||||| ||||| || || || |||||||||||| ||| || ||||| | | Sbjct 2742706 TGAGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 2742765 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | ||| || |||| ||| | ||||| || || || ||||| || | Sbjct 2742766 CGATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCCGTGAGGGTTTTCACGA 2742825 Query 127104 AAATCTGCATGG 127115 | |||||||||| Sbjct 2742826 AGATCTGCATGG 2742837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475466112216640