Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5320 105 8e-18 seq5634 98.7 1e-15 seq4085 89.7 6e-13 >seq5320 Length=807335 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | |||||| | |||| ||||||||| || || || ||||||||||| || Sbjct 501877 CCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAA 501818 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || || || || || ||||| ||||| | |||||| || | || Sbjct 501817 AGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGA 501758 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| || || ||||| || | | ||||||| || || || Sbjct 501757 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCAACT 501698 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| || || ||||| ||||| || || ||||||||| Sbjct 501697 TCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATTTGCATT 501650 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||| | |||| ||| || ||| |||||||| ||||||||||| || Sbjct 502333 CCACCACGTAGACGAAGAACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAA 502274 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || || || || || ||||| ||||| | |||||| || | || Sbjct 502273 AGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGA 502214 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| || || ||||| | | | |||||| || || || Sbjct 502213 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAACT 502154 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||| || || || | ||||| ||||| |||||||| Sbjct 502153 TCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | |||||| | |||| |||||| || || || || ||||||||||| || Sbjct 502105 CCACCACGTAAACGGAGAACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGAA 502046 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || |||||||| || |||||||| ||||| | |||||| || | || Sbjct 502045 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 501986 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGC-GTCGCCACCGTGTCGCTCGATTCCAC 46545 | | ||||||| | ||| || ||| | | || | | ||||| || || || Sbjct 501985 ATTCCTTCCTTGT-CTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAAC 501927 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||| || || || |||| || || || || |||||||| Sbjct 501926 TTCCAGCGTGATTGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 501879 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||| | |||||||||||||| || || || || |||||||| || Sbjct 501649 CCACCACGTAGACGAAGGACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCAGAA 501590 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || || ||||| || ||||| ||||| | |||||| || | || Sbjct 501589 AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGG 501530 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| || || |||| || | | |||||| || || || Sbjct 501529 ATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATCGTGTCCGACGCCTCAACT 501470 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| || || ||||| ||||| || || || |||||| Sbjct 501469 TCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATCTGCATT 501422 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | || | || ||||| | |||| ||| || || ||||| ||||||||| Sbjct 503245 CCACCTCTAAGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGAT 503186 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| || | || || ||||||||||| ||||| |||| | || || |||| || Sbjct 503185 AAAGTCCGTCCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGA 503126 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || || || ||| ||| | | | | |||||| | || || Sbjct 503125 ATGCCTTCTTTATCTTGAATTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGACC 503066 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||| || ||||| || || || ||||| ||||| || ||||| Sbjct 503065 TCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 503019 >seq5634 Length=4821945 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | || ||||| || ||||| | ||| ||||| ||||| |||||||| | Sbjct 1939387 TGCCTCCACGTAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAG 1939446 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| | | || || || || || || || || ||||| || ||||| || | | Sbjct 1939447 AAAGAGTTCTGCCATCCTCTAGTTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAG 1939506 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || ||||| ||| || |||| || | | ||||| | ||||| Sbjct 1939507 GAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTCTCGATAGTGTCAGAAGCTTCCA 1939566 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||||||||| || || || ||||| |||||||||||||| Sbjct 1939567 CCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 1939615 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||||| ||||| || | ||| || || ||||| || ||||| || Sbjct 1938933 CCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAG 1938992 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | |||| || | ||| || || ||||| ||||| || |||||||| | || Sbjct 1938993 AGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 1939052 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || ||||| |||||| || | | | | ||||| | ||| || Sbjct 1939053 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACT 1939112 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | ||||| ||||| ||||| || ||||| ||||||||||||||| Sbjct 1939113 TCAAGGGTGATAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCATT 1939160 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||||| |||| ||| | ||| || |||||||| || ||||| || Sbjct 1938705 CCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCGAG 1938764 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | |||| || | ||| || || || || ||||| || |||||||| | || Sbjct 1938765 AGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGA 1938824 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || ||||| |||||| || | | | | ||||| | ||| || Sbjct 1938825 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 1938884 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | ||||||||||| || || || ||||| || |||||||||||| Sbjct 1938885 TCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938932 >seq4085 Length=6844556 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 46382 AACACCAGATGCAATGTACTCTCCTTTT-GGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||| ||||| || | | | | |||||| |||| ||||| || || | |||||| | || Sbjct 2742624 AACATCAGATACA-TATTCGCACCTTTTTGGATGTTGTAATCAGACAAAGTGCGTCCATC 2742682 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || ||||| ||||||||||| || | ||||| || || | || | | ||||||||| Sbjct 2742683 CTCCAGCTGTTTGCCGGCGAAGATGAGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTC 2742742 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||||| || | | || || | || || || | || || || Sbjct 2742743 CTGGATCTTAGCCTTGACATTCTCGATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGT 2742802 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || ||||| || ||||| ||||| Sbjct 2742803 TTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 2742835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565197165858720