Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq5320 107 1e-18 seq5634 95.1 8e-15 >seq5320 Length=807335 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||| || ||||||||||| || ||| ||||| |||||||| || | Sbjct 502789 CCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTTTGAATATTATAGTCAGAA 502730 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| | || || | |||||||||| | || ||||| | |||||| |||| || Sbjct 502729 AGTGTGCGACCGTCTTCAAGTTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGG 502670 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCAC 39671 | ||||| ||||| ||||| ||| | || | | ||||| | ||||| | || Sbjct 502669 ATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTT-CGAC 502611 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||||||||||||| || | ||||| || || || ||||| Sbjct 502610 TTCCAGAGTAATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 502563 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||| || ||||||||||| ||| |||||| || ||||| || || | Sbjct 502105 CCACCACGTAAACGGAGAACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGAA 502046 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | ||||| ||| | || || || | ||||||||||| || Sbjct 502045 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 501986 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCAC 39671 | ||||| ||||| ||||| ||||| || | | ||||||| ||| || || Sbjct 501985 ATTCCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGC-CTCAAC 501927 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || ||||| || || || || || || ||||| || ||||| Sbjct 501926 TTCCAGCGTGATTGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 501879 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | | || ||||||||||| ||| ||||||||| || || || || | Sbjct 502561 CCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAA 502502 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | ||||| ||| | || || || | ||||||||||| || Sbjct 502501 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 502442 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCAC 39671 | ||||| ||||| ||||| ||||| || | | ||||||| ||| || || Sbjct 502441 ATTCCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGC-CTCAAC 502383 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || ||||| ||||| ||||| || ||||| Sbjct 502382 TTCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||| || ||||||||||| ||| |||||| || ||||| || || | Sbjct 501877 CCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAA 501818 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | |||||| || | || || || | ||||||||||| ||| Sbjct 501817 AGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGA 501758 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCAC 39671 | ||||||||||| ||||| || | || | | ||||| | ||| || || Sbjct 501757 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGACGC-CTCAAC 501699 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || | ||||| ||||| || ||||| Sbjct 501698 TTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATTTGCAT 501651 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | | || ||||||||||| ||| ||| || || ||||| ||||| | Sbjct 503017 CCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCAG-- 502960 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | || |||| || | |||||| ||| | || || || | ||||||||| | | Sbjct 502959 AAAGTGTACGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAG 502900 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCC 39669 ||| ||||| ||||| ||||| ||||| || | | ||||| | ||| || Sbjct 502899 GTATTCCTTCCTTGTCCTGAATTTTGGCTTTAACATTCTCGATCGTGTCCGACGC-CTCA 502841 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || || || || || || || || || ||||| || ||||| Sbjct 502840 ACTTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 502791 >seq5634 Length=4821945 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||||| |||||||| | || ||||||||| || ||||| || | Sbjct 1938705 CCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCGAG 1938764 Query 39553 AAAACGCGTTC-ATCGTCC---AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | | || | | ||||| || ||||| || |||| || ||||| ||||| || | Sbjct 1938765 A----GTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGG 1938820 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | |||||||||||| || || ||| | | ||| |||||| | | ||| Sbjct 1938821 AGGAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTC 1938880 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | ||| || |||||||| || | |||||| |||||||| ||||| Sbjct 1938881 AACTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938931 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||| || ||||| || | ||| ||||||||| ||||| ||||| | Sbjct 1939161 CCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAG 1939220 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || | ||| || || ||||||| | |||||||||||||| ||| Sbjct 1939221 AGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGA 1939280 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || ||||| || ||||| || | | | | ||||| | ||| || Sbjct 1939281 ATTCCCTCTTTATCTTGAATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGACT 1939340 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || ||||||||||| | ||| ||||| |||||||||||| Sbjct 1939341 TCGAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATG 1939388 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC----ATCGTCCAATTGTTTCCCGC 39583 ||||||||| || || ||||| | || | |||| ||| |||| |||||| ||| Sbjct 1938284 TTCTTTTTGGATGTTGTAATCAG----AAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGG 1938339 Query 39584 CAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643 | ||||| | |||||| ||||||| || | ||||||||||| ||||| || | Sbjct 1938340 CGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTGGCCTTCA 1938399 Query 39644 TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTT 39703 | | | || |||| ||| || || | |||||| |||||||| || | ||||| Sbjct 1938400 CATTTTCGATGGTATCTGAAGCTTCGACTTCGAGAGTAATCGTTTTACCGGTGAGAGTTT 1938459 Query 39704 TTACGAAGATCTGCAT 39719 | |||||||| ||||| Sbjct 1938460 TCACGAAGATTTGCAT 1938475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347344892902988