Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4793 266 2e-65 seq4827 183 2e-40 seq5022 113 3e-19 seq5055 86.0 5e-11 >seq4793 Length=379738 Score = 266 bits (294), Expect = 2e-65 Identities = 693/1044 (66%), Gaps = 12/1044 (1%) Strand=Plus/Minus Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334 ||||||||||||| | ||| || |||||||| ||||| || || ||||| | || || | Sbjct 170482 TACCATTGGCATCGATATCGAAAGTGACTTCGATTTGCGGTACACCTCTAGGCGCTGGAG 170423 Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394 | || || || | |||| | || || | ||||||||||| || | || || | Sbjct 170422 GAATACCCGTCAGCTCAAATTTGCCAAGGATGTTATTATCTTTCGTCATCGCTCTCTCTC 170363 Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 517454 ||||| | | ||||| ||| | | |||||| || || || || ||||| ||||| Sbjct 170362 CCTCGTAGACCTGGATGAGCACTCCCGGTTGATTGTCGGAGTATGTGGTAAACG-TCTGG 170304 Query 517455 ATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 | | || | || || || ||||| || | ||| | ||||||||| || || || Sbjct 170303 GTCTGTTTCGTTGGTATCGTCGTGTTCCTCTTAATCAAGGTGGTCATAACGCCGCCAGCG 170244 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573 || || | ||| | || | ||||| || || | | | | || ||| | || ||| Sbjct 170243 GTCTCAATACCCAATGATAACGGAGTCACGTCCAGCAAAAGTAAATCTTGGACTTCCTCA 170184 Query 517574 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 517633 | | ||| ||||| || || |||| || |||||||| |||||||| || || Sbjct 170183 GACTTGTCGCCATGCAGAATGGCCGCCTGAACTGCTGCACCATAAGCAACAGCCTCGTCC 170124 Query 517634 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACC 517693 ||||||| | || || |||| || || || || |||| | |||||| | ||| | Sbjct 170123 GGATTAATGGATTTGTTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGAAGCT-TCTGAAT 170065 Query 517694 TTA-GGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 517752 || || || | | || || || |||| || || || || || | |||||||| Sbjct 170064 TTTTGGTATCCTGGTGGAGCCACCGACTAGAACGATGCTGTGAACTTGAGCTTTATCCAT 170005 Query 517753 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACA 517812 || | ||| | | | || || || ||||| ||| |||||||| || | || Sbjct 170004 CTTCGCATCTCTAAGAGCCTTCTCCACAGGTTCGAGAGTGCTTCTAAACAGATCAGCGCA 169945 Query 517813 AAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAA 517870 || || || ||| | |||||||| || ||| | || || ||||| || || ||||| Sbjct 169944 GAGCTCCTCAAATCTGGCTCTAGT--GACCGACGTATAGAAATCAATCCCCTCAAACAAT 169887 Query 517871 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 517930 ||||| | ||||| | | || ||||| || | | | || || | || || Sbjct 169886 GAATCGATCTCAATGCTCGCCTGCGTCGACGAGCTCAACGTTCTCTTCGCTCTCTCGCAA 169827 Query 517931 GCTGTCCTTAGTCTTCGTAAGGCTTT--TGCTGATTGATTCAAATCTGTTTTATATTTTC 517988 || |||||||| | || | ||| | |||| | || | ||||||| | || ||||| | Sbjct 169826 GCAGTCCTTAGGCGTCTCAGAGCTCTCTTGCT-ACTGCT-CAAATCTTTCTTGTATTTCC 169769 Query 517989 TCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATT 518048 ||||||| |||| ||| | | || | || || ||||| ||||| || || | | Sbjct 169768 TCTTGAATTCTTGCACAAAGTGGTTCACCATTCGGTTGTCAAAGTCTTCGCCACCAAGAT 169709 Query 518049 TAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTA 518108 || | || | ||| | | || | ||| | ||||| || | | ||||| | | Sbjct 169708 GCGTGTCGCCAGCCGTGGACTTCACCTCGAAGATACCATCCTCGATCGTCAAAATCGACA 169649 Query 518109 CATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTT 518168 ||||| ||| |||||||||| ||||| || || |||||| |||| || |||| Sbjct 169648 CATCAAAGGTACCACCACCCAAGTCAAAGATCAGAACATTCTTTTCACCTGCTGCCTTTT 169589 Query 518169 TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAA 518228 |||| ||||||||||| | || || || || || || || || ||||| | ||| || | Sbjct 169588 TATCGAGACCATACGCTATCGCGGCGGCTGTGGGCTCGTTTATTATTCTGAGAACGTTCA 169529 Query 518229 GACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAG 518288 |||||||| || ||||| || || |||||||| || ||||| || ||||| || | Sbjct 169528 AGCCAGCAATAGCGCCGGCATCCTTTGTCGCTTGTCTCTGAGAATCATTGAAATAAGCCG 169469 Query 518289 GAACAGTAATAACGGCATCAGTTA 518312 | ||||| || ||||||| |||| Sbjct 169468 GCACAGTGATGACGGCATTTGTTA 169445 >seq4827 Length=7866672 Score = 183 bits (202), Expect = 2e-40 Identities = 782/1221 (64%), Gaps = 26/1221 (2%) Strand=Plus/Plus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 ||||| || ||||| || ||||| | || ||||| || ||||| ||||| || || | Sbjct 6099605 ACATTGAGGATACCGTTCGCATCAATGTCGAATGTCACCTCAATCTGAGGAACTCCACGA 6099664 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 | || ||||| || || | | ||| | ||||| |||||| || || || | Sbjct 6099665 GGTGCTGGTGGAATACCGCTAAGCTCGAATTTGCCCAGTAGATTATTGTCCTTGGTCATG 6099724 Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444 || ||||| || | | || || || ||| |||||| || | |||||||| Sbjct 6099725 GCGCGCTCACCTTCATATACCTGAATCAACACGCCAGGTTGATTGTCGGCGTAAGTTGTG 6099784 Query 517445 AATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATA 517504 || | | | || || || || || || || | ||| | |||||| | | Sbjct 6099785 AAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTATTCCTCTTAATGAGCGCGGTCATGACA 6099844 Query 517505 CCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 517564 ||||| || || || | ||| ||||| || |||||||| || | | | | | ||| Sbjct 6099845 CCACCGGCAGTCTCAATACCCAGAGAGAGCGGAGTGACGTCGAGCAAAAGCAAGTCTTGC 6099904 Query 517565 AGTTTTTCATCAGTTTGACCAAC----AAGAATAGCTGCTTGAATAGCAGCACCATATGC 517620 | | | || | || | || | |||| |||| || || | || || || ||||| Sbjct 6099905 ACCT---CCTCGGATTTATCACCGTGCAAGA-TAGCCGCCTGTACTGCCGCGCCGTATGC 6099960 Query 517621 AACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAA 517679 ||||| ||||||||||| | || || || || | ||| |||||||| || | ||| | Sbjct 6099961 CACAGCCTCATCAGGATTGATAGATTTGTTGAGCTCTTTGCCATTGAAGAAGTCTTGCAG 6100020 Query 517680 GAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCT 517739 || || | | ||| ||||| || | || ||||| || || || || || || | | Sbjct 6100021 GAGCTTCT-GAATCTTGGGAATTCGTGTAGAGCCTCCGACCAAAACGATATCGTGGATTT 6100079 Query 517740 GTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGA--CCCGCTCT 517797 | | ||| |||| || | || | ||||||||| ||||||||| |||| Sbjct 6100080 GGGCTTTGTCCATCTTGGCGTCGCGCAGCGATTTTTCAACAGGTTCAAGAGTACCGCGGA 6100139 Query 517798 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAAT 517857 ||| | || | || ||||| ||||| ||||| || | | | | |||| || Sbjct 6100140 AAAGA--TCGGCGCAGAGTTCCTCGAAACGAGCTCGGGTGATGGAGGTGTAGAAATCGAT 6100197 Query 517858 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTT 517917 |||||| |||| ||||| | || || | | || || || || || || | ||| || Sbjct 6100198 TCCTTCATACAATGAATCGATCTCGATGCTGGCCTGGGTGGAGGATGACAGGGTACGCTT 6100257 Query 517918 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG---GCTTTTGCTGATTGATTCAAATC 517974 |||||||| || || || | || | || ||| || ||| | | | | ||||| Sbjct 6100258 GGCACGTTCGCAGGCCGTGCGAAGACGACG-AAGTGCGCGTTTATT--TGAAGTTAAATC 6100314 Query 517975 TGTTTTATATTTTCTCTTGAAAT-CTTCAACACACCATGTTACAAGACGATTATCAAAAT 518033 | | || ||||| | ||| || | || || | | || | || | ||| ||||| || | Sbjct 6100315 TTTCTTGTATTTACGCTTAAATTCCTGCACGAAATGAT-TAACCATACGGTTATCGAAGT 6100373 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093 | || || ||||| | ||||| ||| | ||||| | || | ||| | |||||||| | Sbjct 6100374 CCTCGCCACCCAAATGAGTATCTCCAGCCGTAGACTTGACCTCGAAGATACCATCTTCGA 6100433 Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153 | || | | || || || |||||||| | |||||| ||||| || ||| || Sbjct 6100434 TGGTCAGGATGGACACGTCGAAAGTGCCACCACCGAGATCAAAGATAAGGACGTTCCGTT 6100493 Query 518154 CTTTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAAT 518211 | | ||| || || || |||||||| |||| || || || || || || || || Sbjct 6100494 CGCCG--GTGGCCTTCTTGTCGAGACCATATGCAATCGCGGCGGCGGTGGGCTCGTTGAT 6100551 Query 518212 AATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGA 518271 ||| | ||| ||||| | || | || | || || || ||||| || || | || || Sbjct 6100552 AATACGCAATACATTTAAGCCCGAGATAGTACCAGCGTCCTTAGTTGCCTGACGCTGCGA 6100611 Query 518272 ATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGC 518331 ||||| || || || || || || || || || | ||| || || || | ||| || Sbjct 6100612 GTCGTTGAAGTAAGCGGGGACGGTGATCACAGCGTTAGTGACAGTCTTGCCTAAATATGC 6100671 Query 518332 GCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTG 518391 ||| |||| |||||||| ||| | ||| || | || ||| ||| | | Sbjct 6100672 CTCTGCAGTTTCCTTCATTTTTACTAAGACCATCGAACTCACTTCTTCAGGGAAGAAAGT 6100731 Query 518392 CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTT 518451 ||| | || || ||| ||||| || | ||| ||| || | |||| || || | Sbjct 6100732 CTTCGTCTCTCCTTTGTATTGTACTTGAATCTTTGGCTTACCACTATCATTTATTACGGT 6100791 Query 518452 AAATGGCCAGTATTTCATATC 518472 ||| ||||| | |||||| || Sbjct 6100792 AAAGGGCCAATGTTTCATGTC 6100812 Score = 104 bits (114), Expect = 2e-16 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 ||||| || || | ||||| || || |||||| ||||| || ||||| || ||| || Sbjct 6102032 AAAATGGTGTTATTAGGATTCATGGCGACTTGATTCTTGGCGGCGTCTCCGATGAGACGT 6102091 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 518644 || || || ||||| | ||||| || || ||||| || || ||||| || || ||| Sbjct 6102092 TCGGTTTCCGTAAAGGCTACATAACTGGGCGTCGTGCGGTTGCCCTGATCGTTGGCGATA 6102151 Query 518645 ATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATA 518704 || || ||||| |||| ||| | || || || || ||||||| |||||||||||| Sbjct 6102152 ATCTCGACTTTGCCATGTTGGAAGACGCCAACGCACGAGTAAGTTGTGCCTAAATCAATA 6102211 Query 518705 CC 518706 || Sbjct 6102212 CC 6102213 >seq5022 Length=6518063 Score = 113 bits (124), Expect = 3e-19 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 ||| |||| | |||||| | ||||| |||| ||||| |||||||| |||||||| | Sbjct 397889 TTTATCTTCTTGTTTATCCATTCCATAAGCAAGTGCAGCTGCAGTTGGCTCATTAATTAC 397830 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | | |||||| | |||||||| || ||||| || || ||||||| ||| ||||| Sbjct 397829 ACGAAGAACATTCAATCCAGCAATCTGACCAGCATCCTTTGTTGCTTGTCGTTGAGAATC 397770 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 |||||||| || || ||||||||||| |||| ||||| Sbjct 397769 ATTAAAATACGCTGGTACAGTAATAACAGCATTTTTTACT 397730 Score = 107 bits (118), Expect = 1e-17 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || || ||||| || ||||||||||| |||||||||| |||||||| || || ||| Sbjct 397867 CCATAAGCAAGTGCAGCTGCAGTTGGCTCATTAATTACACGAAGAACATTCAATCCAGCA 397808 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 || | | ||| ||| |||||||||| || | ||||||||||| |||||||||||| Sbjct 397807 ATCTGACCAGCATCCTTTGTTGCTTGTCGTTGAGAATCATTAAAATACGCTGGTACAGTA 397748 Query 322364 ATAACTGCTTTATT 322377 ||||| || || || Sbjct 397747 ATAACAGCATTTTT 397734 >seq5055 Length=3208138 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 668854 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACG 668913 ||| || ||||| | ||| | |||||| ||||||| |||||||| || | ||||| || Sbjct 1599970 AGGAAAGGAAGGCAGGATTCGTGGAAATCTGATGGGTAAACGTGTGGACTTCTCTGCGCG 1599911 Query 668914 TACAGTTATTACTTCTGATCCCAATATTGC-TCTCAATGAAGTTGGTGTTCCTCTTATTA 668972 ||| ||||| ||| ||||||||||| |||| | | || |||| || || || | | || Sbjct 1599910 TACTGTTATCACTCCTGATCCCAAT-TTGCGTATTGATCAAGTAGGCGTACCGCGCAGTA 1599852 Query 668973 TTGCTAAAAATCTTACTTT 668991 | || ||||||| || || Sbjct 1599851 TAGCGCAAAATCTGACATT 1599833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780532798456216