Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4827 383 2e-101 seq4793 282 5e-71 seq5665 98.7 1e-15 seq5022 89.7 7e-13 seq3854 84.2 3e-11 >seq4827 Length=7866672 Score = 383 bits (424), Expect = 2e-101 Identities = 877/1308 (67%), Gaps = 14/1308 (1%) Strand=Plus/Plus Query 6497 TCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTT 6555 ||||| || | ||||| |||| | ||||| |||||||||||||| || || | | Sbjct 6099407 TCGACTGTGCTCTTCATGTTGA-AGCAGTAAGACTCGAGACCATTCTTGGCGGAGATCGT 6099465 Query 6556 TTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAAT 6615 || | | ||| || || ||| || || || || || | ||||| ||||||| Sbjct 6099466 TTCCTTCTGCTTCTCGTCCTCACTGCGGTATTTCTCTGCCTCGTTCACCATTCTTTCAAT 6099525 Query 6616 GTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCG 6674 || || || | || ||||| || || ||||| || ||||| ||| ||| || | Sbjct 6099526 ATCCTCCTTGCTGAGTCGACCCTTGTCGTTGGTAATAGTGATCTTGTTCTCCTTT-CCAG 6099584 Query 6675 AGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACAT 6734 | ||| || |||| ||||| | ||||| || ||||||| ||||| | || | Sbjct 6099585 TAGACTTGTCCACAGCGGAGACATTGAGGATACCGTTCGCATCAATGTCGAATGTCACCT 6099644 Query 6735 TAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTA 6794 ||| || || || | ||||| | ||||||||| | | || ||| | || |||| Sbjct 6099645 CAATCTGAGGAACTCCACGAGGTGCTGGTGGAATACCGCTAAGCTCGAATTTGCCCAGTA 6099704 Query 6795 AACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTT 6854 | | || ||| | | | | || ||||||||||| || | ||| ||| |||||| Sbjct 6099705 GATTATTGTCCTTGGTCATGGCGCGCTCACCTTCATATACCTGAATCAACACGCCAGGTT 6099764 Query 6855 GATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCG 6914 |||| || |||| |||| |||| | ||| | || || || ||||| ||| Sbjct 6099765 GATTGTCGGCGTAAGTTGTGAAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTATTCCTCT 6099824 Query 6915 GAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGT 6974 ||| | || |||||| | |||||| ||| || | || ||||| || || || |||| Sbjct 6099825 TAATGAGCGCGGTCATGACACCACCGGCAGTCTCAATACCCAGAGAGAGCGGAGTGACGT 6099884 Query 6975 CCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGA 7034 | | | | || |||||| || ||| ||||| ||||| || || || | Sbjct 6099885 CGAGCAAAAGCAAGTCTTGCACCTCCTCGGATTTATCACCGTGCAAGATAGCCGCCTGTA 6099944 Query 7035 CCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGT 7094 | | ||| |||||||| || |||||||| || || || | ||| || || ||||| || | Sbjct 6099945 CTGCCGCGCCGTATGCCACAGCCTCATCAGGATTGATAGATTTGTTGAGCTCTTTGCCAT 6100004 Query 7095 TAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAA 7154 | || | || | | | ||||| || || |||||||| || || |||||||||| Sbjct 6100005 TGAAGAAGTCTTGCAGGAGCTTCTGAATCTTGGGAATTCGTGTAGAGCCTCCGACCAAAA 6100064 Query 7155 CGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTT 7214 |||| || | | || | ||| || ||||| | ||| || || | |||||| ||||||| Sbjct 6100065 CGATATCGTGGATTTGGGCTTTGTCCATCTTGGCGTCGCGCAGCGATTTTTCAACAGGTT 6100124 Query 7215 CCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATG 7274 | | | ||||| | || || |||||||| ||||| || ||||| ||||| | Sbjct 6100125 CAAGAGTACCGCGGAAAAGATCGGCGCAGAGTTCCTCGAAACGAGCTCGGGTGATGGAGG 6100184 Query 7275 TATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAG 7334 | |||||||| | || || || || ||||| || || ||| | | || | | || | Sbjct 6100185 TGTAGAAATCGATTCCTTCATACAATGAATCGATCTCGATGCTGGCCTGGGTGGAGGATG 6100244 Query 7335 ATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTAC 7394 | | || ||||| || || || || ||||| || | ||||||||| || | | ||| Sbjct 6100245 ACAGGGTACGCTTGGCACGTTCGCAGGCCGTGCGAAGACGACGAAGTGCGC---GTTTAT 6100301 Query 7395 CGGAA---ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTC 7451 ||| | ||||||||| | |||||| ||||| || | ||| || || | | Sbjct 6100302 TTGAAGTTAAATCTTTCTTGTATTTACGCTTAAATTCCTGCACGAAATGATTAACCATAC 6100361 Query 7452 TCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGA 7511 |||||| || || |||||||| || ||||| || || || | ||||| || |||| Sbjct 6100362 GGTTATCGAAGTCCTCGCCACCCAAATGAGTATCTCCAGCCGTAGACTTGACCTCGAAGA 6100421 Query 7512 TACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGA 7571 |||| |||| ||| | | | || || || || || |||||||| || ||||| || | Sbjct 6100422 TACCATCTTCGATGGTCAGGATGGACACGTCGAAAGTGCCACCACCGAGATCAAAGATAA 6100481 Query 7572 GTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 | |||||| ||| || ||||| |||||||| || || || || || || || | Sbjct 6100482 GGACGTTCCGTTCGCCGGTGGCCTTCTTGTCGAGACCATATGCAATCGCGGCGGCGGTGG 6100541 Query 7632 GTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 | || || |||||||| || ||| || | ||| | ||||| | || || || || || Sbjct 6100542 GCTCGTTGATAATACGCAATACA-TTTAAGCCCGAGATAGTACCAGCGTCCTTAGTTGCC 6100600 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || || ||||| ||||| ||||| || ||||| || | || |||| ||||| |||| Sbjct 6100601 TGACGCTGCGAGTCGTTGAAGTAAGCGGGGACGGTGATCACAGCGTTAGTGACAGTCTTG 6100660 Query 7751 CCGAGATACGATTCCGCGATATCTTTCA-TTTTGGTAAGAACCATCGA 7797 || | ||| | || || | || |||| |||| |||| |||||||| Sbjct 6100661 CCTAAATATGCCTCTGCAGTTTCCTTCATTTTTACTAAG-ACCATCGA 6100707 Score = 127 bits (140), Expect = 3e-24 Identities = 143/191 (75%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 |||| ||||| || || |||||||| ||| ||||| || ||||| ||||| |||||| Sbjct 6102032 AAAATGGTGTTATTAGGATTCATGGCGACTTGATTCTTGGCGGCGTCTCCGATGAGACGT 6102091 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | ||||||||| || || || || ||||| || || || || ||||| || Sbjct 6102092 TCGGT---TTCCGTAAAGGCTACATAACTGGGCGTCGTGCGGTTGCCCTGATCGTTGGCG 6102148 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 ||||| || || | | | ||| ||||||| |||||||| || ||||| ||||||||| Sbjct 6102149 ATAATCTCGACTTTGCCATGTTGGAAGACGCCAACGCACGAGTAAGTTGTGCCTAAATCA 6102208 Query 8138 ATACCGATTGC 8148 ||||||| ||| Sbjct 6102209 ATACCGACTGC 6102219 Score = 89.7 bits (98), Expect = 7e-13 Identities = 163/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || || || || || || || || || ||||||||| | ||| Sbjct 6049553 ATCGAAATCTTCGCCTCCTAAATGAGTGTCGCCATTAGTGGCAACGACTTCAAACACACC 6049612 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || | | ||| |||||||| || || || ||||||||||| | ||||| Sbjct 6049613 GTTGTCGATAGTGAGCAAACTGACATCAAAGGTGCCGCCGCCCAGGTCAAACACCAGTAC 6049672 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | ||| ||||| ||||| || | |||||| || || || || || || || || Sbjct 6049673 GTTTTTCTCGCCGTCT---TTCTTGTCCAAACCGTATGCAATTGCAGCAGCAGTCGGCTC 6049729 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || ||||| | | | || ||||| ||| ||| | ||||| || || || ||| Sbjct 6049730 GTTGATAATTCTCATTACGACCAAGCCAGAAATTGTTCCAGCATCCTTGGTGGCCTGT 6049787 >seq4793 Length=379738 Score = 282 bits (312), Expect = 5e-71 Identities = 747/1128 (66%), Gaps = 21/1128 (2%) Strand=Plus/Minus Query 6693 TTACATT-CAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCC 6751 ||| ||| ||| ||||||| ||||| | |||||| | || | ||||| ||| ||| Sbjct 170495 TTATATTGCAACTTACCATTGGCATCGATATCGAAAGTGACTTCGATTTGCGGTACACCT 170436 Query 6752 CTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCC 6811 || || || | ||||||||||| | |||||| | ||||| | | ||||| ||| | Sbjct 170435 CTAGGCGCTGGAGGAATACCCGTCAGCTCAAATTTGCCAAGGATGTTATTATCTTTCGTC 170376 Query 6812 TTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCT---TGTGCC 6868 || | || || || ||||| | || ||| | |||||||| || | || Sbjct 170375 ATCGCTCTCTCTCCCTCGTAGACCTGGATGAGCACTCCCGGTTGATTGTCGGAGTATGTG 170316 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || | | | | | ||| | || | ||| |||||||| || ||| ||| | | |||| Sbjct 170315 GT--AAACGTCTGGGTCTGT-TTCGTTGGTATCGTCGTGTTCCTCTTAATCAAGGTGGTC 170259 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCA---AGAGTAAC 6985 |||| || || || || | || | || | || |||||||||| | ||||| Sbjct 170258 ATAACGCCGCCAGCGGTCTCAATACCCAATGATAACGGAGTCACGTCCAGCAAAAGTAAA 170199 Query 6986 AGGTCTTGAACAGATTCGTTCC-CTTCAC-CCGTTAAGA-TGGCGGCTTGGACCGTCGCC 7042 ||||| || ||| | ||| | || | ||| |||| || || || | || Sbjct 170198 ---TCTTGGAC---TTCCTCAGACTTGTCGCCATGCAGAATGGCCGCCTGAACTGCTGCA 170145 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 || || || || ||||| || || ||||| | ||| |||||||| || |||||||| || Sbjct 170144 CCATAAGCAACAGCCTCGTCCGGATTAATGGATTTGTTCAGTTCCTTGCCGTTAAAGAAA 170085 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 || | | | |||||||| || || | || || |||||||| | |||||| Sbjct 170084 TCTTGAAGAAGCTTCTGAATTTTTGGTATCCTGGTGGAGCCACCGACTAGAACGATGCTG 170025 Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 | |||| | |||||| ||||| | |||| ||| | || || |||||||| | | Sbjct 170024 TGAACTTGAGCTTTATCCATCTTCGCATCTCTAAGAGCCTTCTCCACAGGTTCGAGAGTG 169965 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 | | |||| || || || |||||||| | || | || | || ||||||||| Sbjct 169964 CTTCTAAACAGATCAGCGCAGAGCTCCTCAAATCTGGCTCTAGTGACCGACGTATAGAAA 169905 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 |||| || || | || ||||| || |||||| | | || | || ||| |||||| Sbjct 169904 TCAATCCCCTCAAACAATGAATCGATCTCAATGCTCGCCTGCGTCGACGAGCTCAACGTT 169845 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 | ||| || | ||| || || || | || || | || || | | | ||| | | | Sbjct 169844 CTCTTCGCTCTCTCGCAAGCAGTCCTTAGGCGTCTCAGAGCTCTCTTGCTACTGCTCAAA 169785 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCGAA 7461 |||||||| | ||| | || || |||| || | ||||| | | || || || Sbjct 169784 TCTTTCTTGTATTTCCTCTTGAATTCTTGCACA-AAGTGGTTCACCATTCGGTTGTCAAA 169726 Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521 ||||| ||||| | || || || || || || | || || || |||||||| | || Sbjct 169725 GTCTTCGCCACCAAGATGCGTGTCGCCAGCCGTGGACTTCACCTCGAAGATACCATCCTC 169666 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581 || | || | ||| |||||||| ||||||||||||| |||||| || || || ||| | Sbjct 169665 GATCGTCAAAATCGACACATCAAAGGTACCACCACCCAAGTCAAAGATCAGAACATTCTT 169606 Query 7582 ATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 || | || || ||||||||||| ||||| || || || || || || || || || Sbjct 169605 TTCACCTGCTGCCTTTTTATCGAGACCATACGCTATCGCGGCGGCTGTGGGCTCGTTTAT 169546 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 || | ||| ||||| ||||||||||| | ||||| || |||||||||| || || Sbjct 169545 TATTCTGAGAACGTTCAAGCCAGCAATAGCGCCGGCATCCTTTGTCGCTTGTCTCTGAGA 169486 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761 ||| || || || ||||| || || | ||| || | || | |||| || || |||| Sbjct 169485 ATCATTGAAATAAGCCGGCACAGTGATGACGGCATTTGTTATAGTCTTGCCCAGGTACGC 169426 Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| | || ||||| || || | ||||| || || | ||| || Sbjct 169425 CTCCGCCGTCTCCTTCATCTTCGTCAAGACCATAGAGGACACCTCCTC 169378 >seq5665 Length=3828390 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 105955 GTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCG 106014 |||| |||||||| |||||||||| ||||| | || | | || || || | Sbjct 3269585 GTACAGGCATTGAATAGAGTTGGTGAAGCATGTGTAAAATATCGTTCGGACAAATAATTA 3269644 Query 106015 TATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATATAG 106074 |||||||| | ||| | |||||| || | | |||||||||||| ||| || | ||| | Sbjct 3269645 TATGTTTCTATGACTTTATCAATCTCATTTTCATGAATACCAACAGCTACTCTCATCAAC 3269704 Query 106075 AGATATTGGGGTGTTTCAATAATTTCACCGTCAATTTTCTGGAGATACCCTTTTTCAAGT 106134 | || ||| || | || | || | ||| | |||||| | ||||| | | | ||||| Sbjct 3269705 ATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTTCAGCAGATAACTTCTCTCAAGC 3269764 Query 106135 GTTTTTAAACCAAAATACCCAAACTCAAAATCACGTTCG 106173 ||||| ||||||| ||| | | | ||||||||| ||| Sbjct 3269765 GTTTTAAAACCAATATAATTATAATTAAAATCACGATCG 3269803 >seq5022 Length=6518063 Score = 89.7 bits (98), Expect = 7e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 6678 CCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAA 6737 |||||||| || ||||| || ||||||||||||||||| |||||| |||| | | Sbjct 399307 CCTTATCTCTGGCTGATACATGCACAATACCATTTGCATCAATATCGAATGTTACTTCTA 399248 Query 6738 TTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTA-AATCAAATGTACCAAGTAAA 6796 |||||||| |||||| ||||| | ||||||||| | | | | || ||| || || | Sbjct 399247 TTTGTGGTACACCCCTTGGTGCAGGTGGAATACCAATAAGACTAAACTGT-CCTAGAAGC 399189 Query 6797 CTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGA 6856 ||||||| ||| | | || || |||| || |||||||| || | |||| Sbjct 399188 TTGTTATCACCAGCCATTTCTCGCTCGCCTTGATGAACTTTAATCTCGACTTGTGTTTGA 399129 Query 6857 TTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATT 6909 |||| |||||| || || | ||| ||||| | || || || ||||| Sbjct 399128 CCATCTGCTGCCGTAGAAAATACTTGACTCTTCTTTGTAGGTATAGTTGTATT 399076 >seq3854 Length=2013501 Score = 84.2 bits (92), Expect = 3e-11 Identities = 83/106 (78%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 22431 AAAAACGTGTAAA-TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAA 22489 ||||| |||||| |||||||| ||||| || || || || || || |||||| ||| Sbjct 180474 AAAAATCTGTAAAATTTTATCATGCATCAACGTCCGAACTTTATGGCAAAGTACTAGAAG 180415 Query 22490 CTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGG 22535 |||||||| |||||| ||||| ||||| || || || |||||||| Sbjct 180414 TTCCACAAACTGAAAAGACACCATTTTATCCACGCTCTCCATATGG 180369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635086467062240