Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4511 89.7 6e-13 seq5665 82.4 9e-11 >seq4511 Length=1767931 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 119515 CTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCT 119574 |||| || || ||||| || || || |||||| || || ||||||| ||||| ||||| Sbjct 464550 CTTCGTCTCGCGAGATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCT 464609 Query 119575 TTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAG 119634 |||||||||| ||||| ||||| ||| |||||||| ||||| || || || | Sbjct 464610 TTAGCCAAAAAATGGCTGCGAAACTGCCACTGAAGAAGATACCCTCAACCGCCGCAAATG 464669 Query 119635 CGAATAGACGCTCAGCAAA 119653 ||| || ||| || | ||| Sbjct 464670 CGACTACACGTTCGGGAAA 464688 >seq5665 Length=3828390 Score = 82.4 bits (90), Expect = 9e-11 Identities = 211/319 (66%), Gaps = 17/319 (5%) Strand=Plus/Plus Query 110164 GTTTCTACG---GGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTC 110220 |||||| || || |||||||| ||||||||| || ||||| || || | Sbjct 3268472 GTTTCTTCGATAGGATAAAAGTTAACGTCGATGACTTTATCTAGATTACGAGTGACGATT 3268531 Query 110221 TTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGA----CATA 110276 |||| || | | ||||| ||| |||| || ||||| || || |||| | |||| Sbjct 3268532 TTCGCGACTGTTTTAAGTTTATCGAAATCAAATGTTTTGGTGTCTATATTAATGAACATA 3268591 Query 110277 TTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTC 110336 || || ||| ||||| || | |||||| |||| || | | | |||||| Sbjct 3268592 TT----GACAGCGATAGATGCTAAATTGCATACAGCGACTTCACCAGGACCAGAGTATTC 3268647 Query 110337 CAAAATTTCCGTACACAAGTTGGAACTCTTAATGACA---CCCAAGTTCTTCTGATTCGA 110393 | |||||| || ||||||||| | || |||| || | | || |||||||| Sbjct 3268648 AATAATTTCGGTGCACAAGTTGCTGCATTT---GACAGTGCCTATATGCTGATGATTCGA 3268704 Query 110394 TTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTT 110453 ||| |||||| ||| || || ||||| || || || |||||||| || ||| | Sbjct 3268705 TTTTCGGTTGCAATGATCTTTGTAAAGCATATAAGGTGTTCCAGTTTCTACTTGGGACCT 3268764 Query 110454 GAGAATGGCCTTCCATACA 110472 ||||||||| ||||||| Sbjct 3268765 GAGAATGGCGAGCCATACA 3268783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588933034200800