Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq5132 118 1e-21 >seq5132 Length=4754993 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 154875 ATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAG 154934 ||||| || || ||||| || |||| ||||||||| | ||||| | ||||| || Sbjct 1178256 ATGATCACGTATCCATCGACGAATGGAGTATTTGAAGAAACGATTAGTGATATATGCAAC 1178197 Query 154935 ATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTA 154994 || || || || ||||||||| |||||| | || || || ||| | ||||| || || Sbjct 1178196 ATGGTGCACAACGCTGGTGGTCAAGTATATTTGGACGGTGCCAATATGAATGCTCAAGTT 1178137 Query 154995 GGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACA 155054 || | ||| |||| ||||| || || | ||||| || ||||||||||| Sbjct 1178136 GGCTTGTGTCGACCTGGTGATTATGGCAGCGACGTGTCACATCTCAATCTACATAAAACA 1178077 Query 155055 TTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| ||||| ||||| ||||| || ||||| | |||||||| || || Sbjct 1178076 TTCTGCATTCCTCATGGGGGTGGCGGACCTGGTATGGGTCCTATCGGAGT 1178027 Score = 105 bits (116), Expect = 8e-18 Identities = 179/253 (71%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAA--CAA 153825 ||| | ||||| |||||| | |||||||| || ||||| |||| ||||||||| | | Sbjct 1179529 CAACGTTTTGGGATTCCTCTTGGATATGGTGGACCTCACGCTGGATTCTTTGCCTGCCGA 1179470 Query 153826 CAGACAAGT-ATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAA 153884 ||| ||| | || | || | ||||||||||| ||||| || | ||| | | | Sbjct 1179469 CAG-CAATTGATCCGCTTAA--TGCCTGGCAGAATGATAGGT--GTTACGAGAGATTCCA 1179415 Query 153885 --GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACA 153942 || | | || || | ||||| || || || | ||||| || ||||| ||||| | Sbjct 1179414 ATGGAGAGGACGCTTATCGTTTAGCCCTCCAAACGCGCGAGCAACACATCAGAAGAGATA 1179355 Query 153943 AAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATG 154002 |||| ||||| || || || || || || || | || ||||||||||||| | | || | Sbjct 1179354 AAGCCACCAGCAATATTTGTACCGCACAAGCGTTACTCGCTAATATGTCTGCAATGTACG 1179295 Query 154003 CAGCATATCATGG 154015 ||| ||||||||| Sbjct 1179294 CAGTATATCATGG 1179282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579170546426240