Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq5132 113 5e-20 >seq5132 Length=4754993 Score = 113 bits (124), Expect = 5e-20 Identities = 193/273 (71%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 158422 GACAT-TGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCA 158480 ||||| ||| || |||| | ||| | ||||| |||||| | ||||| || || ||||| Sbjct 1179550 GACATATGC-GTGGGTACGAGCCAACGTTTTGGGATTCCTCTTGGATATGGTGGACCTCA 1179492 Query 158481 TGCTGCATTCTTTGCAA--CAACAGACAAGT-ATAAGAGAAAGATACCTGGCAGAATTGT 158537 |||| ||||||||| | |||| ||| | || | || | ||||||||||| | Sbjct 1179491 CGCTGGATTCTTTGCCTGCCGACAG-CAATTGATCCGCTTAA--TGCCTGGCAGAATGAT 1179435 Query 158538 AGGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGA 158597 |||| | |||| | | || | | || || | ||||| || || || | || Sbjct 1179434 AGGTGTTACGAGAGATTCCAATGGAGAGGACGCTTATCGTTTAGCCCTCCAAACGCGCGA 1179375 Query 158598 GCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGC 158657 ||| || ||||||||||| ||||| ||||| || || || || |||||||| | || || Sbjct 1179374 GCAACACATCAGAAGAGATAAAGCCACCAGCAATATTTGTACCGCACAAGCGTTACTCGC 1179315 Query 158658 TAATATGTCTGGGTTCTATGCAGCATATCATGG 158690 ||||||||||| | || |||| ||||||||| Sbjct 1179314 TAATATGTCTGCAATGTACGCAGTATATCATGG 1179282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588008301664960