Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5634 183 7e-41 seq5320 158 3e-33 >seq5634 Length=4821945 Score = 183 bits (202), Expect = 7e-41 Identities = 169/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| |||||||| ||||| ||||| || ||||||||||||| ||||||||| ||||| Sbjct 1938491 CAGAACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATC 1938550 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| || || || || ||||| || | || ||||| || || ||||| |||||||| || Sbjct 1938551 TTCCAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCTTTATC 1938610 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| ||||| ||| ||||| ||||||||||| ||| ||| ||||| || |||| || Sbjct 1938611 TTGGATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGAGTAATGGT 1938670 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || | |||||| ||||| | ||||||| Sbjct 1938671 TTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938704 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| ||||| |||||||||||||||||||| | |||||||| |||||||| Sbjct 1939178 AACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTTCTGCCATCTTC 1939237 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| || || || || || || || || || || ||||| || ||||| ||||| Sbjct 1939238 AAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATCTTG 1939297 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| ||| ||||| ||||||||||||||| ||| ||||| ||||| | || || Sbjct 1939298 AATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTTTT 1939357 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| ||||| || | ||||| Sbjct 1939358 ACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||||| | ||| || ||||| |||||||| || |||||||| | ||||||||| Sbjct 1938258 AGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTG 1938317 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || || || ||||| || || || ||||| || || ||||| |||||| Sbjct 1938318 CCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCT 1938377 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || ||||| ||| || || || ||||| || ||| ||| ||||| || ||| Sbjct 1938378 TTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCGACTTCGAGAGTA 1938437 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | ||| || || || | |||||| ||||| | ||||||| Sbjct 1938438 ATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938476 Score = 163 bits (180), Expect = 6e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || |||||| ||||| || || || || || || ||||| || | ||||||||| ||||| Sbjct 1939403 CAGAACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATC 1939462 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || || || || || || ||||| | ||||| || ||||||||||| ||||||||||| Sbjct 1939463 CTCTAGTTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTC 1939522 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| ||||| ||||| ||||| || ||||| ||| |||||| |||||||| | || Sbjct 1939523 TTGGATTTTAGCTTTGACATTCTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGT 1939582 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | |||||||| || | |||||| Sbjct 1939583 TTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 1939615 Score = 152 bits (168), Expect = 1e-31 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| |||||||| ||||| ||||| || || || || || | || || || || || Sbjct 1938947 CAGAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAGAGTGTCCTACCGTC 1939006 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||| ||||| |||||||| | ||||| ||||| |||||||||||||||||||| Sbjct 1939007 TTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTTGTC 1939066 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || || || || || || ||||| ||| ||| ||||||||||| | || Sbjct 1939067 TTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGGGTGATAGT 1939126 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || | |||||| || || | ||||||| Sbjct 1939127 TTTACCCGTGAGAGTTTTCACAAAGATTTGCATT 1939160 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || |||||||| || || || || | || || || || || || | ||| Sbjct 1938729 TGAAGGGTAGATTCTTTTTGGATGTTATAGTCCGAGAGTGTCCTACCGTCCTCTAACTGT 1938788 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| | ||||| ||||| ||||||||||||||||||||||| || || Sbjct 1938789 TTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGGATCTTA 1938848 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || ||||| || || ||||| || ||| |||||||| || | || || || || Sbjct 1938849 GCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGAGTGATGGTTTTACCGGTG 1938908 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | |||||| ||||| | ||||||| Sbjct 1938909 AGAGTTTTCACGAAGATTTGCATT 1938932 >seq5320 Length=807335 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| | ||||| ||||| || |||||||| |||||||| || |||| | ||| Sbjct 503240 TCTAAGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGATAAAGT 503181 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || ||||| || |||| |||||| || ||||||||||| Sbjct 503180 CCGTCCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCC 503121 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||||||||| ||| || || || || ||||| ||| || || || || Sbjct 503120 TTCTTTATCTTGAATTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGACCTCCAG 503061 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | |||||| || || | ||||| Sbjct 503060 CGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 503019 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| ||||| ||||||||||| || | ||| || | |||||||| || || || || Sbjct 501847 GTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCA 501788 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | || || || || || ||||| |||||||||||||||||||| |||| Sbjct 501787 GCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTG 501728 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || ||||| || ||||| || || ||||| | || | ||||||||||||| ||| Sbjct 501727 ACATTCTCGATCGTGTCGGACGCCTCAACTTCCAATGTGATGGTCTTTCCTGTCAGGGTT 501668 Query 195124 TTTACGAACACTTGCATT 195141 || ||||| | ||||||| Sbjct 501667 TTGACGAAAATTTGCATT 501650 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || |||||||| | || | ||||| ||||||||||| ||||| || | ||| || | Sbjct 502552 AGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGG 502493 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||||||||| || || |||||||| | || || || || || || || ||||| Sbjct 502492 CCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCC 502433 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| || || ||||| || ||||| || || ||||| | || Sbjct 502432 TTGTCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAACGTG 502373 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||||||||| || ||||| ||||| | |||||| Sbjct 502372 ATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| ||||| ||||||||||| || | ||| || | |||||||||||||| || || Sbjct 502075 GTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCGAGCTGTTTTCCG 502016 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | || || || || || || || ||||| |||||||||||||| || Sbjct 502015 GCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTA 501956 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || ||||| || ||||| || || ||||| || || | |||||||||||||| || Sbjct 501955 ACATTCTCGATAGTGTCTGACGCCTCAACTTCCAGCGTGATTGTCTTTCCTGTCAATGTC 501896 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 501895 TTGACGAAAATTTGCAT 501879 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| ||||| ||||| ||||| || | ||| || | |||||||| || ||||| || Sbjct 501619 GTGGATTCTTTCTGAATGTTGTAGTCAGAAAGTGTGCGACCATCTTCAAGTTGCTTTCCA 501560 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | || || || || || || || |||||||||||||||||||| ||| Sbjct 501559 GCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTG 501500 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || ||||| || |||||||| || ||||| | || | ||||||||||||| ||| Sbjct 501499 ACATTCTCGATCGTGTCCGACGCCTCAACTTCCAATGTGATGGTCTTTCCTGTCAGGGTT 501440 Query 195124 TTTACGAACACTTGCATT 195141 || ||||| | |||||| Sbjct 501439 TTGACGAAAATCTGCATT 501422 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || |||||||| | || | ||||| || || |||||||||||||| | ||| || | Sbjct 503008 AGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCAGAAAGTGTACGA 502949 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || || || |||||||| | | || || |||||||| || ||||| Sbjct 502948 CCATCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGTATTCCTTCC 502889 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| |||||||| || || ||||| || |||||||| || ||||| | || Sbjct 502888 TTGTCCTGAATTTTGGCTTTAACATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTG 502829 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||||||||| || || ||||| | |||||| Sbjct 502828 ATGGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 502791 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || |||||||||||||| || | ||| || | |||||||| || || || || Sbjct 502303 GTAGATTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCA 502244 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | || || || || || ||||| |||||||||||||||||||| |||| Sbjct 502243 GCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTG 502184 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || || ||||| || || ||||| || || | ||||||||||| || ||| Sbjct 502183 ACATTTTCGATCGTGTCTGACGCCTCAACTTCCAGCGTGATGGTCTTTCCTGTTAATGTT 502124 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 502123 TTGACAAAAATTTGCAT 502107 Score = 127 bits (140), Expect = 5e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||| || || || |||||||||||||| | |||| || | |||||||| ||||| Sbjct 501397 TGAAGAGTAGATTCCTTCTGAATATTGTAATCAGACAAG-GTACGTCCATCTTCCAGCTG 501339 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | || || || || || ||||||||||| || || || || || Sbjct 501338 CTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGAATGCCTTCCTTATCCTGGATCTT 501279 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || || ||||| || ||||| ||| || |||||||| || | ||||| || || Sbjct 501278 TGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTCCCAGT 501219 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | ||||| Sbjct 501218 CAATGTCTTCACAAAAATCTGCAT 501195 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||||||||| || || | ||| || | || ||||| || || || || Sbjct 502759 GTAGATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGACCGTCTTCAAGTTGTTTCCCG 502700 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | | || ||||| ||||| || ||||| |||||||||||||| ||| Sbjct 502699 GCGAAGATTAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTG 502640 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || ||||| || |||||||| ||| ||||| || |||| || || || || | ||| Sbjct 502639 ACATTCTCGATCGTGTCCGACGCTTCGACTTCCAGAGTAATTGTTTTACCGGTAAGCGTT 502580 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 502579 TTGACAAAAATTTGCAT 502563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109398639900212