Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5634 120 2e-22 seq4085 111 1e-19 seq5320 96.9 2e-15 >seq5634 Length=4821945 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || ||||| ||||| |||| ||||||||| ||||||||||| | Sbjct 1938931 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTG 1938990 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | | | || |||| |||||| || || || || | ||||||||||| | | Sbjct 1938991 AGAGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 1939050 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||||| ||| || | |||| | ||| || |||| Sbjct 1939051 GAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAA 1939110 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| || ||||| ||||||||||| ||||||||||| ||||| Sbjct 1939111 CTTCAAGGGTGATAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 1939159 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || |||||| |||| || |||||| || ||||||||||||| Sbjct 1938703 TTCCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCG 1938762 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | | | || || | |||||| || ||||| || | ||||||||||| | | Sbjct 1938763 AGAGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAG 1938822 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||||| ||| ||| | |||| | ||| ||| |||| Sbjct 1938823 GAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 1938882 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || |||||||| || |||||||| ||||| ||||| ||||| Sbjct 1938883 CTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938931 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| |||| |||||| ||||| || || || || || ||| |||| || Sbjct 1939178 AACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTTCTGCCATCTTC 1939237 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| || || || ||||| || | || | ||||| || || Sbjct 1939238 AAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATCTTG 1939297 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || || ||| | | || | || || || || |||| ||| |||||||| Sbjct 1939298 AATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTTTT 1939357 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| |||||||| |||||||||||||| Sbjct 1939358 ACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| ||||| ||| |||| || || |||||||| ||||| Sbjct 1939424 TTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGTTTTCCAGCAAA 1939483 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | |||||||| ||| | || | || || ||||| || || |||||| | Sbjct 1939484 GATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTAGCTTTGAC--A 1939541 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | ||| || || || || | ||| ||||||||||| ||||| || || Sbjct 1939542 TTCTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTT 1939601 Query 34968 ACAAAGATCTGCAT 34981 |||||||| ||||| Sbjct 1939602 ACAAAGATTTGCAT 1939615 >seq4085 Length=6844556 Score = 111 bits (122), Expect = 1e-19 Identities = 141/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| || ||||| || || || | | ||| |||| ||||||||||| ||||| || | Sbjct 2742646 CTTTTTGGATGTTGTAATCAGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 2742705 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | ||||| || || ||| | || | ||||||||||| ||||| ||||| || Sbjct 2742706 TGAGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGAC--ATT 2742763 Query 34912 CT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 || || | ||| |||||| || |||| ||| || ||||| |||||||| || ||||| Sbjct 2742764 CTCGATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCCGTGAGGGTTTTCAC 2742823 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 2742824 GAAGATCTGCAT 2742835 >seq5320 Length=807335 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || | ||| || | ||||| |||| || ||| |||||||| || || || | Sbjct 501423 TTCCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAG 501364 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | | | | ||| |||| |||||||| ||||| ||||| || | || ||||| || | | Sbjct 501363 ACAAGGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTG 501304 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | || ||||| || ||||| ||| || || || || | ||| ||||| Sbjct 501303 GAATGCCTTCCTTATCCTGGATCTTTGCTTTTAC--ATTCTCGATAGTGTCAGAAGCCTC 501246 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | |||||||| || || || | ||||||||||| |||||||| Sbjct 501245 AACTTCAAGAGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 501195 Score = 96.9 bits (106), Expect = 2e-15 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 |||||||||||| || | ||| |||||| |||||||| ||||| ||||| | || | Sbjct 502550 CCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGGCC 502491 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| || |||||||||||||| || || | || ||||| || | || | || ||||| Sbjct 502490 ATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTT 502431 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTT 34943 ||| ||| || ||| || || || || | || |||||||| || | || Sbjct 502430 GTCTTGAATTTTGGCTTTAAC--ATTCTCGATAGTGTCTGACGCCTCAACTTCCAACGTG 502373 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| || | || || || || || |||||| Sbjct 502372 ATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCATA 502334 Score = 96.9 bits (106), Expect = 2e-15 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 |||||||||||| || | |||| ||| |||||||| || || || ||||| | || | Sbjct 503006 CCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCAGAAAGTGTACGACC 502947 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| || || ||||||||||| || || | | ||||| ||| | || | || ||||| Sbjct 502946 ATCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGTATTCCTTCCTT 502887 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTT 34943 ||| ||| || ||| || || || |||| || |||||||| || | || Sbjct 502886 GTCCTGAATTTTGGCTTTAAC--ATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTG 502829 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| || | ||||| || || || |||||| Sbjct 502828 ATGGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCATA 502790 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| || | |||| ||||||||||||||| ||||| ||||| | || |||| || Sbjct 501631 ACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGTGTGCGACCATCTTCA 501572 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| || || || | || ||||| || | || | || || ||||| | Sbjct 501571 AGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTCTTGA 501512 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || |||| || |||||||| || | || ||||| | Sbjct 501511 ATTTTAGCTTTGAC--ATTCTCGATCGTGTCCGACGCCTCAACTTCCAATGTGATGGTCT 501454 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || || || || || || |||||||| Sbjct 501453 TTCCTGTCAGGGTTTTGACGAAAATCTGCAT 501423 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | ||| |||||||||||| || ||||| ||||| | || |||| || Sbjct 502088 AACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTC 502029 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||||||||| || || | || ||||| || | || | || |||||||| Sbjct 502028 GAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTG 501969 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || ||| || || || || | || |||||||| || | || || || Sbjct 501968 AATTTTGGCTTTAAC--ATTCTCGATAGTGTCTGACGCCTCAACTTCCAGCGTGATTGTC 501911 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || | ||||| || || || |||||| Sbjct 501910 TTTCCTGTCAATGTCTTGACGAAAATTTGCATA 501878 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | |||| |||||||||||| || ||||| ||||| | || |||| || Sbjct 501860 AACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTC 501801 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||||| || || || | || ||||| || | || | || || ||||| Sbjct 501800 AAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTG 501741 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || ||||| || || |||| || |||||||| || | || ||||| Sbjct 501740 AATTTTGGCCTTGAC--ATTCTCGATCGTGTCGGACGCCTCAACTTCCAATGTGATGGTC 501683 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || || || || || || || ||||| Sbjct 501682 TTTCCTGTCAGGGTTTTGACGAAAATTTGCAT 501651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324610510029408