Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016-
03-25] 5,836 sequences; 291,747,019 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq5665 111 2e-19
seq4511 111 2e-19
>seq5665
Length=3828390
Score = 111 bits (122), Expect = 2e-19
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371
||| ||||| ||||| |||||||||||| | ||| | | ||||||||| |||||
Sbjct 3267878 ATGCGGATTGACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGT 3267937
Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431
||| ||||| || ||||| ||||| || |||||||| || || || || || ||||| |
Sbjct 3267938 ATACGGTTCAATGGATTCGTTATTCCCTAAAATTTGTGCCGTCGAGGCCGTTGGCATAGG 3267997
Query 47432 TGCAACTAATAAGC-TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCC 47490
||| | ||| |||| |||||||||||| | || |||| | ||
Sbjct 3267998 TGCTATTAA-AAGCGAATTTCTTACTCCGTGCTTCGCAATCTTCGCCTTCAATTTATCCC 3268056
Query 47491 AATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539
||||||| | || || || ||| ||||| | ||||||||| |||||
Sbjct 3268057 AATCCCATAAATTTGTCGGTTTAACGTTCCACATATCATATTGGAGAAT 3268105
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/135 (77%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332
||| |||| || |||||||| | ||| || | ||||| ||||||||||| || |||||
Sbjct 3269189 CCAATATTTCTCTTAAGTTCCAAAAAATCGAAAATATCGGCATGCCATGGCTCCAAATAA 3269248
Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392
|| || | | | || |||| ||||||||| |||||||| | ||| |||| ||| ||||
Sbjct 3269249 ATAGCAAATGCTCCGGGTCTTTTATTACCGCCTTGATCAACATAAATGGCCATATCGTTA 3269308
Query 48393 TA-AACTCTTAACAT 48406
|| |||| |||| ||
Sbjct 3269309 TACAACT-TTAAAAT 3269322
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 48608 ATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTC 48667
||| |||| ||||| || ||||| |||| || || || || | |||||||||||
Sbjct 3269593 ATTGAATAGAGTTGGTGAAGCATGTGTAAAATATCGTTCGGACAAATAATTATATGTTTC 3269652
Query 48668 AATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTG 48727
|| || ||| || || || ||| ||||| | || ||| | ||| ||||||| |||
Sbjct 3269653 TATGACTTTATCAATCTCATTTTCATGAATACCAACAGCTACTCTCATCAACATATGTTG 3269712
Query 48728 AGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAA 48787
||| || || || || || ||| ||||||| ||||| | | || | ||||||||
Sbjct 3269713 AGGCCTCTCGACTATCTTACCATTGATTTTCAGCAGATAACTTCTCTCAAGCGTTTTAAA 3269772
Query 48788 ACCAAAATAGTTGTA 48802
||||| ||| || ||
Sbjct 3269773 ACCAATATAATTATA 3269787
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/213 (70%), Gaps = 11/213 (5%)
Strand=Plus/Plus
Query 47833 TTAA-TTTATTAAAATCAAAC---TTGTTATTTATAACAA---ACCTATTAAGTGCTATA 47885
|||| ||||| |||||||| ||| | | |||| || || |||| | || |||
Sbjct 3268544 TTAAGTTTATCGAAATCAAATGTTTTGGTGTCTATATTAATGAACATATTGACAGCGATA 3268603
Query 47886 GATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACAT 47945
||||||| ||| |||||||| || ||| ||| || |||| || ||||| | ||
Sbjct 3268604 GATGCTAAATTGCATACAGCGACTTCACCAGGACCAGAGTATTCAATAATTTCGGTGCAC 3268663
Query 47946 AGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGT 48003
| || | ||||||| ||| || | || |||||||| ||| ||| || |
Sbjct 3268664 AAGTTGCTGCATTTGACAGTGCCTATATGCTGATGATTCGATTTTCG--GTTGCAATGAT 3268721
Query 48004 CCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTA 48036
| |||||||||||| ||||||||||||||||||
Sbjct 3268722 CTTTGTAAAGCATATAAGGTGTTCCAGTTTCTA 3268754
Score = 86.0 bits (94), Expect = 7e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159
||||||| || |||||||| |||||||| ||| || |||| |||||||||||| ||
Sbjct 3267567 ATATGAACGTTTAGAGATTGCGACTGATCAACAAAAGCTCCTCGATCAGCTGCCATTTCG 3267626
Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAA 47199
| ||| || |||| ||||||||||| || || || ||||
Sbjct 3267627 AGAATTACTTTTTGCGGTATCTCCCAGACCGTCTTGTAAA 3267666
>seq4511
Length=1767931
Score = 111 bits (122), Expect = 2e-19
Identities = 145/200 (73%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313
|||||| || ||||||||||||||||| || || ||||| || || ||||| | ||||||
Sbjct 465840 GTACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTC 465899
Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373
| || | || || | ||||| || | || ||| |||||||| || |||||
Sbjct 465900 GGGAATTTTCACCTCTTGGCTGAATCTCTCAATCAGATTCTCATTAACGATACCATCGGA 465959
Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA---ATGT 19430
||| ||||| |||||||| ||||| ||||| ||||| ||||| || ||| |
Sbjct 465960 AGCGGCAAAGAATGCTAAGACATGAGAGATAAAGTGTTTCTCATCGGAATTTAGCTTTTC 466019
Query 19431 ATTCCAATCATTAATATCTT 19450
||||||||| || | ||||
Sbjct 466020 ATTCCAATCCTTTTTGTCTT 466039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562067794163040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |