Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5665 111 2e-19 seq4511 111 2e-19 >seq5665 Length=3828390 Score = 111 bits (122), Expect = 2e-19 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 ||| ||||| ||||| |||||||||||| | ||| | | ||||||||| ||||| Sbjct 3267878 ATGCGGATTGACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGT 3267937 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 ||| ||||| || ||||| ||||| || |||||||| || || || || || ||||| | Sbjct 3267938 ATACGGTTCAATGGATTCGTTATTCCCTAAAATTTGTGCCGTCGAGGCCGTTGGCATAGG 3267997 Query 47432 TGCAACTAATAAGC-TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCC 47490 ||| | ||| |||| |||||||||||| | || |||| | || Sbjct 3267998 TGCTATTAA-AAGCGAATTTCTTACTCCGTGCTTCGCAATCTTCGCCTTCAATTTATCCC 3268056 Query 47491 AATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 ||||||| | || || || ||| ||||| | ||||||||| ||||| Sbjct 3268057 AATCCCATAAATTTGTCGGTTTAACGTTCCACATATCATATTGGAGAAT 3268105 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 ||| |||| || |||||||| | ||| || | ||||| ||||||||||| || ||||| Sbjct 3269189 CCAATATTTCTCTTAAGTTCCAAAAAATCGAAAATATCGGCATGCCATGGCTCCAAATAA 3269248 Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392 || || | | | || |||| ||||||||| |||||||| | ||| |||| ||| |||| Sbjct 3269249 ATAGCAAATGCTCCGGGTCTTTTATTACCGCCTTGATCAACATAAATGGCCATATCGTTA 3269308 Query 48393 TA-AACTCTTAACAT 48406 || |||| |||| || Sbjct 3269309 TACAACT-TTAAAAT 3269322 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48608 ATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTC 48667 ||| |||| ||||| || ||||| |||| || || || || | ||||||||||| Sbjct 3269593 ATTGAATAGAGTTGGTGAAGCATGTGTAAAATATCGTTCGGACAAATAATTATATGTTTC 3269652 Query 48668 AATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTG 48727 || || ||| || || || ||| ||||| | || ||| | ||| ||||||| ||| Sbjct 3269653 TATGACTTTATCAATCTCATTTTCATGAATACCAACAGCTACTCTCATCAACATATGTTG 3269712 Query 48728 AGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAA 48787 ||| || || || || || ||| ||||||| ||||| | | || | |||||||| Sbjct 3269713 AGGCCTCTCGACTATCTTACCATTGATTTTCAGCAGATAACTTCTCTCAAGCGTTTTAAA 3269772 Query 48788 ACCAAAATAGTTGTA 48802 ||||| ||| || || Sbjct 3269773 ACCAATATAATTATA 3269787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/213 (70%), Gaps = 11/213 (5%) Strand=Plus/Plus Query 47833 TTAA-TTTATTAAAATCAAAC---TTGTTATTTATAACAA---ACCTATTAAGTGCTATA 47885 |||| ||||| |||||||| ||| | | |||| || || |||| | || ||| Sbjct 3268544 TTAAGTTTATCGAAATCAAATGTTTTGGTGTCTATATTAATGAACATATTGACAGCGATA 3268603 Query 47886 GATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACAT 47945 ||||||| ||| |||||||| || ||| ||| || |||| || ||||| | || Sbjct 3268604 GATGCTAAATTGCATACAGCGACTTCACCAGGACCAGAGTATTCAATAATTTCGGTGCAC 3268663 Query 47946 AGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGT 48003 | || | ||||||| ||| || | || |||||||| ||| ||| || | Sbjct 3268664 AAGTTGCTGCATTTGACAGTGCCTATATGCTGATGATTCGATTTTCG--GTTGCAATGAT 3268721 Query 48004 CCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTA 48036 | |||||||||||| |||||||||||||||||| Sbjct 3268722 CTTTGTAAAGCATATAAGGTGTTCCAGTTTCTA 3268754 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159 ||||||| || |||||||| |||||||| ||| || |||| |||||||||||| || Sbjct 3267567 ATATGAACGTTTAGAGATTGCGACTGATCAACAAAAGCTCCTCGATCAGCTGCCATTTCG 3267626 Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAA 47199 | ||| || |||| ||||||||||| || || || |||| Sbjct 3267627 AGAATTACTTTTTGCGGTATCTCCCAGACCGTCTTGTAAA 3267666 >seq4511 Length=1767931 Score = 111 bits (122), Expect = 2e-19 Identities = 145/200 (73%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 |||||| || ||||||||||||||||| || || ||||| || || ||||| | |||||| Sbjct 465840 GTACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTC 465899 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 | || | || || | ||||| || | || ||| |||||||| || ||||| Sbjct 465900 GGGAATTTTCACCTCTTGGCTGAATCTCTCAATCAGATTCTCATTAACGATACCATCGGA 465959 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA---ATGT 19430 ||| ||||| |||||||| ||||| ||||| ||||| ||||| || ||| | Sbjct 465960 AGCGGCAAAGAATGCTAAGACATGAGAGATAAAGTGTTTCTCATCGGAATTTAGCTTTTC 466019 Query 19431 ATTCCAATCATTAATATCTT 19450 ||||||||| || | |||| Sbjct 466020 ATTCCAATCCTTTTTGTCTT 466039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562067794163040