Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5320 125 5e-24 seq5634 111 1e-19 seq4085 107 1e-18 >seq5320 Length=807335 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | |||| ||| |||||||| | |||| ||||||||||| ||||| ||||| Sbjct 502561 CCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAA 502502 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | ||| || ||||| || |||| || ||| ||||||| || Sbjct 502501 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 502442 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || ||| ||| | | || ||||||||||| || Sbjct 502441 ATTCCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACT 502382 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| || || ||||| || || ||||| || ||||| ||||| Sbjct 502381 TCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | |||| ||||| ||||||||||| ||||| || | || | || || Sbjct 502087 ACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCG 502028 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || ||||| || |||| || ||| ||||||| || | || |||||||| | Sbjct 502027 AGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGA 501968 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | || ||||||||||| || |||| ||| || || ||| Sbjct 501967 ATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAGCGTGATTGTCTTT 501908 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || ||||| ||||| Sbjct 501907 CCTGTCAATGTCTTGACGAAAATTTGCAT 501879 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || || || ||||||||||||||||| | | || | || ||| Sbjct 501403 ACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAGACAAGGTACGTCCATCTTCC 501344 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| |||| ||||| ||||| | |||| ||| ||||| || Sbjct 501343 AGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGAATGCCTTCCTTATCCTGG 501284 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||||||| | | || || || ||||| || || | || || || || Sbjct 501283 ATCTTTGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTC 501224 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| || || |||||||||||||| ||| Sbjct 501223 CCAGTCAATGTCTTCACAAAAATCTGCATGGTG 501191 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48537 TCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCA 48596 || || || || || || | || | ||| || || |||||| |||||||| || || Sbjct 503248 TCTCCACCTCTAAGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCG 503189 Query 48597 GATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTG 48656 |||| | | || | || || | |||||| || || || ||||||| |||||||| | Sbjct 503188 GATAAAGTCCGTCCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGA 503129 Query 48657 GGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716 |||| ||| || || || ||| || |||||| | | | ||||| ||||| Sbjct 503128 GGAATGCCTTCTTTATCTTGAATTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCG 503069 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| |||||| ||||| || || | |||||| |||||||||||||| Sbjct 503068 ACCTCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 503019 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||||||| || || |||||||||||||| ||||| Sbjct 502333 CCACCACGTAGACGAAGAACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAA 502274 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || || | || || || || || |||| || ||| ||||||| |||| Sbjct 502273 AGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGA 502214 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||| || || ||| | | | ||||||||||| || Sbjct 502213 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAACT 502154 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| || || ||||| || || ||||| |||||||| ||||| Sbjct 502153 TCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | |||| ||| |||||||| | ||| || || ||||||||||||||||| Sbjct 503017 CCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCAGAA 502958 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || || | || || ||||| || |||| | ||| ||||| | || Sbjct 502957 AGTGTACGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGT 502898 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || ||| ||| | | | || |||||||| || Sbjct 502897 ATTCCTTCCTTGTCCTGAATTTTGGCTTTAACATTCTCGATCGTGTCCGACGCCTCAACT 502838 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| || || ||||| ||||| || || || ||||| ||||| Sbjct 502837 TCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 502791 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||| ||| | ||| ||||| ||||| ||||| ||||| Sbjct 501649 CCACCACGTAGACGAAGGACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCAGAA 501590 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || || | ||||| || || || |||| || ||| ||||||| ||| Sbjct 501589 AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGG 501530 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||| || ||| ||| | | | || |||||||| || Sbjct 501529 ATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATCGTGTCCGACGCCTCAACT 501470 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| |||| ||||| || ||||||||||| Sbjct 501469 TCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATCTGCAT 501423 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | ||| ||||| ||||||||||| ||||| || | ||| | || || Sbjct 501859 ACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCA 501800 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || || || || |||| || ||| ||||||| ||||| || || ||||| | Sbjct 501799 AGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGA 501740 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | || |||||||| || |||| || || || ||| Sbjct 501739 ATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCAACTTCCAATGTGATGGTCTTT 501680 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| ||||| || ||||| ||||| Sbjct 501679 CCTGTCAGGGTTTTGACGAAAATTTGCAT 501651 >seq5634 Length=4821945 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||||||||||||||||||||||| ||| ||| | || || Sbjct 1939179 ACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTTCTGCCATCTTCA 1939238 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || ||||| ||||| ||||| ||||||| ||||| ||||| || || | Sbjct 1939239 AGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATCTTGA 1939298 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||| | | | || || || || || || | || || ||||| Sbjct 1939299 ATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTTTTA 1939358 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | ||| |||||||| |||||||| Sbjct 1939359 CCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || || || || ||| |||||||| || ||||||||||| ||| ||| Sbjct 1938258 AGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTG 1938317 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| || || ||||| || ||||| ||||||||||||| |||| || || Sbjct 1938318 CCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCT 1938377 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || ||| | | | ||||| || || || || | ||| Sbjct 1938378 TTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCGACTTCGAGAGTA 1938437 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || || | |||||| || || || ||||| Sbjct 1938438 ATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938475 >seq4085 Length=6844556 Score = 107 bits (118), Expect = 1e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||||||| || ||||||||||| | | | || | || |||| ||| || ||||| || | Sbjct 2742646 CTTTTTGGATGTTGTAATCAGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 2742705 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | |||||||||||||| | |||| ||||||||||| ||||| || ||| Sbjct 2742706 TGAGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 2742765 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | || || ||||| ||||| | ||||| ||||| ||||| | ||||| || | Sbjct 2742766 CGATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCCGTGAGGGTTTTCACGA 2742825 Query 48757 AAATCTGCATCGTG 48770 | |||||||| ||| Sbjct 2742826 AGATCTGCATGGTG 2742839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380910505337028