Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4108 109 1e-18 seq4511 84.2 4e-11 >seq4108 Length=1286978 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 |||||||| ||| || || ||||| |||| | |||||| || || |||||||| ||||| Sbjct 410852 CTTGAGCAGCTTGACCTTGTCCTCGAGCCTGGAGATGCGCTCGAGCTTGCGCCGTCGGCA 410793 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| |||| |||||||| | | ||| | ||| |||||| ||||||| Sbjct 410792 CTTGGAGGCGGCCACGCGGTTCCTCTGCCGCTTCCTCTCCAGCTTGATCTTCTCCTGGTT 410733 Query 241609 CTCCATGTCGATCGGAGACTTGGGT 241633 ||||||||||||||| ||| | ||| Sbjct 410732 CTCCATGTCGATCGGCGACATCGGT 410708 >seq4511 Length=1767931 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||||||||| || | ||| ||||| || || || || || ||||| | || || Sbjct 465840 GTACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTC 465899 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | | ||| ||| | ||||||||| | |||||||||||| || || ||||| || Sbjct 465900 GGGAATTTTCACCTCTTGGCTGAATCTCTCAATCAGATTCTCATTAACGATACCATCGGA 465959 Query 48544 AGCAGCAAAGAAGGCAAGGACATG 48567 ||| |||||||| || | |||||| Sbjct 465960 AGCGGCAAAGAATGCTAAGACATG 465983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931464844682240