Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5320 179 7e-40 seq5634 152 9e-32 seq4085 84.2 4e-11 >seq5320 Length=807335 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| | ||||||||| ||||| | ||||| |||||| |||||||||||||||| Sbjct 503245 CCACCTCTAAGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGAT 503186 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | ||| |||| || || || || ||||| | ||| |||||||| ||||| Sbjct 503185 AAAGTCCGTCCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGA 503126 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || |||||||||||||| ||||| | |||| |||| || || || |||| ||| || Sbjct 503125 ATGCCTTCTTTATCTTGAATTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGACC 503066 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||||||||| || || ||||| ||||| || ||||| Sbjct 503065 TCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 503019 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | || || || |||| |||||| |||| || || |||||| Sbjct 502799 AATTTGCATACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTTTGAATATT 502740 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || | || | | || || | |||||| ||||| || ||||| ||||| || Sbjct 502739 ATAGTCAGAAAGTGTGCGACCGTCTTCAAGTTGTTTCCCGGCGAAGATTAACCTCTGCTG 502680 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| |||||||| || ||||| ||||||| ||| | ||| || || || || Sbjct 502679 GTCCGGAGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGA 502620 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| ||||| || |||||||| || |||||||| ||||| |||||||| Sbjct 502619 CGCTTCGACTTCCAGAGTAATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 502563 Score = 154 bits (170), Expect = 3e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | || || || |||| ||||||||| | ||||| |||||| Sbjct 501887 AATTTGCATACCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATT 501828 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | | ||| || | ||||||||| || || || |||||||| || Sbjct 501827 GTAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTG 501768 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||| ||||| ||||||| || | ||| || || ||||| Sbjct 501767 ATCCGGGGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGA 501708 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||||||||| | || || || || ||||| || ||||| || || ||||||||| Sbjct 501707 CGCCTCAACTTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATTTGCATT 501650 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | ||||| |||| ||| || |||| || || |||||| Sbjct 502343 AATTTGCATACCACCACGTAGACGAAGAACCAAATGTAAGGTAGATTCCTTTTGAATATT 502284 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | | ||| || | ||||||||| || || || |||||||| || Sbjct 502283 GTAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTG 502224 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||| ||||| ||||||| || | |||| || || || || Sbjct 502223 ATCCGGGGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGA 502164 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| || || || || || ||||||| ||||| ||||| |||||||| Sbjct 502163 CGCCTCAACTTCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | || || || |||| |||||| || | ||||| |||||| Sbjct 502115 AATTTGCATACCACCACGTAAACGGAGAACCAAATGCAACGTGGATTCTTTCTGAATATT 502056 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | ||| || | ||||||||||| || || |||||||| || Sbjct 502055 GTAGTCAGAAAGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTG 501996 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| || ||||| ||||||| ||| | ||| ||||| || || Sbjct 501995 ATCCGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGA 501936 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| || || || || || ||||| | || || || || |||||||| Sbjct 501935 CGCCTCAACTTCCAGCGTGATTGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 501879 Score = 136 bits (150), Expect = 7e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | ||||| |||||||||||||| | ||||| ||| || Sbjct 501659 AATTTGCATTCCACCACGTAGACGAAGGACCAGATGCAATGTGGATTCTTTCTGAATGTT 501600 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | | ||| || | ||| ||||| || || || |||||||| || Sbjct 501599 GTAGTCAGAAAGTGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTG 501540 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||| ||||| ||||| | ||| | ||| || || || || Sbjct 501539 ATCCGGGGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATCGTGTCCGA 501480 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||||||||| | || || || || ||||| || ||||| || || || |||||| Sbjct 501479 CGCCTCAACTTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATCTGCATT 501422 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| |||||| || | ||||| ||| || ||||| || | || | ||| || Sbjct 502543 ACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCG 502484 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||||||||||| || || |||||||| ||||| || || |||||||| || ||||| Sbjct 502483 AGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGA 502424 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||||| ||| | ||| ||||| || || | ||||||||| | || || || || Sbjct 502423 ATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTTT 502364 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| ||||| || || |||||||| Sbjct 502363 CCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Score = 120 bits (132), Expect = 5e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||||||||| | || || |||||| || || || | || | | ||| || Sbjct 502999 ACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCA 502940 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | |||||||||||| || || || ||||| ||||| |||||||||||||| || || || Sbjct 502939 AGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGTATTCCTTCCTTGTCCTGA 502880 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||||| ||| | ||| || || || || | ||||||||| | || || || || Sbjct 502879 ATTTTGGCTTTAACATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTGATGGTCTTT 502820 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | || || || || |||||||| Sbjct 502819 CCTGTCAATGTCTTGACGAAAATTTGCAT 502791 >seq5634 Length=4821945 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||| | || || ||||| || | ||| | ||||| ||||| Sbjct 1938468 ATTTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATATTG 1938527 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| | ||||| ||| || | |||||| ||||| ||||| || | ||||||| Sbjct 1938528 TAATCGGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGA 1938587 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||||||||| ||||||| |||| ||| ||| || || ||| Sbjct 1938588 TCCGGTGGAATTCCTTCTTTATCTTGGATTTTGGCCTTTACGTTTTCAATGGTGTCTGAA 1938647 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || ||||| ||||| || |||||||| || || ||||| || || ||||||||| Sbjct 1938648 GCTTCGACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938704 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||| | || || ||||| || | ||| | ||||| || ||| Sbjct 1938924 ATTTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTA 1938983 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || ||| || || || ||||| || || || || || | || || Sbjct 1938984 TAGTCTGAGAGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGG 1939043 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || |||||||| ||||| || || | ||||| |||| || || || ||| Sbjct 1939044 TCAGGAGGAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAA 1939103 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | |||||||| || || ||||||||||| || || ||||| ||||| ||||||||| Sbjct 1939104 GCTTCAACTTCAAGGGTGATAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCATT 1939160 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||| | ||||| |||| || | ||| | ||||| |||||| Sbjct 1939152 ATTTGCATTCCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTG 1939211 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | ||||| ||| || | ||| || || |||||||| | | ||| ||| Sbjct 1939212 TAATCAGAGAGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGA 1939271 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||| ||||||||||| ||||||| |||| ||| ||| || || ||| Sbjct 1939272 TCCGGGGGAATTCCCTCTTTATCTTGAATTTTGGCCTTTACGTTTTCAATGGTGTCCGAA 1939331 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| || || || |||||||| || || || |||||||| || ||||| Sbjct 1939332 GCTTCGACTTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 Score = 123 bits (136), Expect = 4e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || || || || | ||||| ||| || | |||||| ||||| ||||| | | | Sbjct 1938294 ATGTTGTAATCAGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGC 1938353 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || ||||||||||| || || ||||||| || | |||| || ||| Sbjct 1938354 TGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTA 1938413 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| || ||||| ||||| || |||||||| || || ||||| || || |||||| Sbjct 1938414 TCTGAAGCTTCGACTTCGAGAGTAATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGC 1938473 Query 193359 ATT 193361 ||| Sbjct 1938474 ATT 1938476 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | |||| || || || || ||||| || | ||||| | Sbjct 1939401 CGCAGAACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCA 1939460 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||| ||||||||| ||||| || || | || ||||| ||||| || |||||||| Sbjct 1939461 TCCTCTAGTTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTG 1939520 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | ||| | ||| ||||| || |||| || || || || || || Sbjct 1939521 TCTTGGATTTTAGCTTTGACATTCTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATG 1939580 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||||||||| |||||||| Sbjct 1939581 GTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 1939615 >seq4085 Length=6844556 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| ||||| || || | || ||||||||| || || ||||| || || || || || Sbjct 2742690 TGTTTGCCGGCGAAGATGAGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATC 2742749 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | ||| || ||||| || | ||| || || || || ||||||||||| Sbjct 2742750 TTAGCCTTGACATTCTCGATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCC 2742809 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || ||||| Sbjct 2742810 GTGAGGGTTTTCACGAAGATCTGCAT 2742835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899588770211520