Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5320 140 5e-28 seq5634 125 1e-23 seq4511 93.3 6e-14 >seq5320 Length=807335 Score = 140 bits (154), Expect = 5e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | ||||| ||||||||||| | || ||||| | ||| Sbjct 503019 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCA 503078 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || || ||||| ||||||||||||||||| ||||| || ||| Sbjct 503079 GACACGATCGAAAATGTAAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 503138 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| |||||| || || |||||||| |||||| | |||||||| || |||||| Sbjct 503139 CAAAGACTGATTTTCGCGGGCAAGCAGCTAGAAGATGGACGGACTTTATCCGACTATAAT 503198 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || |||||| | || | || | ||||| || Sbjct 503199 ATTCAGAAAGAGTCTACACTTCATCTTGTACTTCGACTTAGAGGTGG 503245 Score = 100 bits (110), Expect = 4e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||||||||| || || || || | ||||| || | |||| Sbjct 501195 ATGCAGATTTTTGTGAAGACATTGACTGGGAAGACCATAACTCTTGAAGTTGAGGCTTCT 501254 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| || || || ||||| |||||||| || || || || Sbjct 501255 GACACTATCGAGAATGTAAAAGCAAAGATCCAGGATAAGGAAGGCATTCCACCTGATCAG 501314 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || |||||||| |||||| | || || || ||||| ||| Sbjct 501315 CAGCGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACCTTGTCTGATTACAAT 501374 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || || || | || |||||||| || | ||||| Sbjct 501375 ATTCAGAAGGAATCTACTCTTCATTTGGTCCTCAGATT 501412 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||| || ||||| || || || || ||||| || | || Sbjct 502335 ATGCAAATTTTCGTCAAAACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 502394 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| ||||| || ||||| || || || || || Sbjct 502395 GACACTATCGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGATCAG 502454 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||||| || |||||||||||| | | || | || || || || Sbjct 502455 CAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAC 502514 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | ||| | ||||| || || || | | |||||| Sbjct 502515 ATTCAAAAAGAATCCACGTTGCATTTGGTTTTGAGGCTTCGCGGCGGT 502562 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || |||||||| ||||| || || || | ||||| || | || Sbjct 501879 ATGCAAATTTTCGTCAAGACATTGACAGGAAAGACAATCACGCTGGAAGTTGAGGCGTCA 501938 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| ||||| || ||||| || || || || || Sbjct 501939 GACACTATCGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGATCAG 501998 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||||| || |||||||||||| | | || | || || || ||| Sbjct 501999 CAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAT 502058 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | ||| | ||||| || Sbjct 502059 ATTCAGAAAGAATCCACGTTGCATTTGGT 502087 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || |||||||| ||||| || || || || ||||| || | || Sbjct 502791 ATGCAAATTTTCGTCAAGACATTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCG 502850 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||||| || || || ||||| ||||||||||| || Sbjct 502851 GACACGATCGAGAATGTTAAAGCCAAAATTCAGGACAAGGAAGGAATACCTCCAGATCAG 502910 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| || || || |||||| | || | || ||||| ||| Sbjct 502911 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGTACACTTTCTGATTACAAT 502970 Query 156003 AT 156004 || Sbjct 502971 AT 502972 >seq5634 Length=4821945 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | || || ||||| ||||| | |||||||||| ||| Sbjct 1938704 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 1938645 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||||| || ||||| |||||||||||||| || || || || || Sbjct 1938644 AGACACCATTGAAAACGTAAAGGCCAAAATCCAAGATAAAGAAGGAATTCCACCGGATCA 1938585 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||||| ||||| || || || |||||| ||||||| | || ||||| || Sbjct 1938584 ACAGCGTTTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCCGATTACAA 1938525 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 ||| ||||| | || ||||| Sbjct 1938524 TATCCAGAAAGAATCCACACTTCA 1938501 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||||||||| || || | || || |||| |||| Sbjct 1939615 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 1939556 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| |||||| ||||| |||||||| || |||||||| || Sbjct 1939555 GACACTATCGAGAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 1939496 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| || || || || || ||| ||||||| | || || || || Sbjct 1939495 CAACGTTTGATCTTTGCTGGAAAACAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 1939436 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || || | ||||||||| Sbjct 1939435 ATCCAGAAGGAATCTACGCTTCAT 1939412 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | || || |||||||| || | ||||| |||| ||| Sbjct 1939160 AATGCAAATCTTTGTGAAAACTCTCACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTC 1939101 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || ||| || ||| ||| || ||||| ||||||||||| ||||| || || Sbjct 1939100 TGACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 1939041 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||| | || ||||| ||| | ||||| || || | ||||| ||||| Sbjct 1939040 GCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAA 1938981 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 || ||||| | || ||||| Sbjct 1938980 CATCCAGAAAGAATCCACACTTCA 1938957 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || ||||| || || | |||||||||| ||| Sbjct 1939387 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTCG 1939328 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||||| ||||||||||| || || || || || || Sbjct 1939327 GACACCATTGAAAACGTAAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCGGATCAG 1939268 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||||| ||| || ||||| || |||||| ||||||| | || ||||| ||| Sbjct 1939267 CAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTACAAT 1939208 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || ||||| || || Sbjct 1939207 ATTCAAAAAGAATCCACACTTCACTTGGT 1939179 Score = 100 bits (110), Expect = 4e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | || || ||||| || || | ||||| |||| || Sbjct 1938932 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 1938873 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || |||||| ||| ||| || ||||| ||||||||||| ||||| || || Sbjct 1938872 TGACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 1938813 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||| | ||| ||||| ||| | || || || || | || || ||||| Sbjct 1938812 GCAACGTTTGATCTTTGCTGGTAAACAGTTAGAGGACGGTAGGACACTCTCGGACTATAA 1938753 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || |||||||| || Sbjct 1938752 CATCCAAAAAGAATCTACCCTTCATTTGGT 1938723 >seq4511 Length=1767931 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/208 (70%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 |||||||| | ||| |||||||| || || | |||||| ||||| |||||||| || Sbjct 465799 TTTTCTTTTGGATCAGAAATATAAGTTTCAATGAGCAAAGAGTACATCTCAGAATGAATA 465858 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTC---G 18526 |||| || || || ||||| | ||| || | | || |||||| || | ||| | Sbjct 465859 TTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCGGGAATTTTCACCTCTTGG 465918 Query 18527 CTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCC 18586 || ||||| || | || |||||||||||| ||||| || | || || || ||||| Sbjct 465919 CTG---AATCTCTCAATCAGATTCTCATTAACGATACCATCGGAAGCGGCAAAGAATGCT 465975 Query 18587 AAAACATATTTAATGAAATGTTTTTCAT 18614 || |||| || || ||||| |||| Sbjct 465976 AAGACATGAGAGATAAAGTGTTTCTCAT 466003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731818609937600