Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq5320 152 1e-31 seq5634 132 9e-26 seq5499 98.7 2e-15 >seq5320 Length=807335 Score = 152 bits (168), Expect = 1e-31 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | ||||| | || |||||||| |||| || ||| || ||||| || || Sbjct 502336 ATACCACCACGTAGACGAAGAACCAAATGTAAGGTAGATTCCTTTTGA-ATATTGTAGTC 502278 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | ||| || |||| || | |||||| ||||| ||||| |||||||| ||||| || Sbjct 502277 AGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGG 502218 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || ||||||||||| ||||| ||||| || ||||| || | ||||||| || Sbjct 502217 GGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTC 502158 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || || ||||||||||| | ||| || ||||| Sbjct 502157 AACTTCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||||||| || | ||| | ||| | |||| |||||| |||||||| || ||| Sbjct 503245 CCACCTCTAAGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGAT 503186 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || ||| |||| || | || || || || || || | ||| |||||||| || || Sbjct 503185 AAAGTCCGTCCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGA 503126 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||||||||| ||||| |||||||| || | ||||| | || || Sbjct 503125 ATGCCTTCTTTATCTTGAATTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGACC 503066 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||||||||| | ||||| | ||| |||||||| Sbjct 503065 TCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 503019 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| | ||||| || || ||||| |||||||| || || ||| |||| ||| Sbjct 501403 ACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAGACAAGGTACGTCCATCTTCC 501344 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | || || ||||||||||| || | ||| ||||||||||| || ||||| ||||| || Sbjct 501343 AGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGAATGCCTTCCTTATCCTGG 501284 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || ||||||||| |||| || || | || ||||| ||||| ||||| || Sbjct 501283 ATCTTTGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTC 501224 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || | ||| |||||||| Sbjct 501223 CCAGTCAATGTCTTCACAAAAATCTGCAT 501195 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| | || || ||||| || || | ||||| || || || ||| Sbjct 502564 ATACCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCA 502505 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | ||||| || || ||||| |||||||| ||||| ||| Sbjct 502504 GAAAGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGT 502445 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| ||||| ||| ||||| |||| ||||||| || Sbjct 502444 GGGATTCCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCA 502385 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| || || ||||||||||| | || || ||||| Sbjct 502384 ACTTCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| || || | ||||| || || || ||| Sbjct 501652 ATTCCACCACGTAGACGAAGGACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCA 501593 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | ||| || ||||| ||||| |||||||| ||||| || Sbjct 501592 GAAAGTGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGG 501533 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| |||||| ||| ||||| || | || |||| || Sbjct 501532 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATCGTGTCCGACGCCTCA 501473 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || ||||| || || || | ||||| | || ||||||||| Sbjct 501472 ACTTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATCTGCATT 501422 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | ||| | || ||||| || || | ||||| ||||| || ||| Sbjct 501880 ATACCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCA 501821 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | |||||| ||||| ||||| |||||||| ||||| || Sbjct 501820 GAAAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGG 501761 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| ||||| || ||||| || | || |||| || Sbjct 501760 GGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCA 501701 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || ||||| || || || | ||||| | || || |||||| Sbjct 501700 ACTTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATTTGCATT 501650 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| | || || ||||| || || | || || ||||| |||||| Sbjct 503020 ATACCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCA 502961 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | |||||| || || ||||| || ||||| ||||| || Sbjct 502960 GAAAGTGTACGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGA 502901 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 ||||||||||| || || || ||||| ||| ||||| || | || |||| || Sbjct 502900 GGTATTCCTTCCTTGTCCTGAATTTTGGCTTTAACATTCTCGATCGTGTCCGACGCCTCA 502841 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| || || || ||||| || | || || ||||| Sbjct 502840 ACTTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 502791 >seq5634 Length=4821945 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| ||||| ||||| || | || | ||||| ||| || |||||| Sbjct 1938246 ATACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCA 1938305 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| |||| |||||| || || || || | | ||||||||| ||| Sbjct 1938306 GAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGT 1938365 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || ||||| || ||||| || | |||||| | ||| Sbjct 1938366 GGAATTCCTTCTTTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCG 1938425 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| |||||||| |||||||| || | ||||| | || || |||||| Sbjct 1938426 ACTTCGAGAGTAATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938476 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| |||||| | || | || | || | ||||| |||||| ||||| Sbjct 1938474 ATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCG 1938533 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| |||| |||||| || || || || || | ||||||||| ||| Sbjct 1938534 GAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGATCCGGT 1938593 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| ||||| ||||| || || | ||||| | ||| Sbjct 1938594 GGAATTCCTTCTTTATCTTGGATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCG 1938653 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| ||||||||||||||||| || | ||||| | || || |||||| Sbjct 1938654 ACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938704 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| |||||| | || ||||| | |||| ||||| ||| ||||| || Sbjct 1938702 ATTCCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCC 1938761 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| | | || || || ||||||||||||||||| || | || || ||||| Sbjct 1938762 GAGAGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGA 1938821 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || ||| |||||| || ||| | || || | ||| Sbjct 1938822 GGAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCA 1938881 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| ||||| ||||||||||| || | ||||| | || || |||||| Sbjct 1938882 ACTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938932 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| |||||| | || | || | || | ||||| ||| ||||| || Sbjct 1938930 ATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCT 1938989 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| | | || ||||| ||||||||||| ||||| || | || || ||||| Sbjct 1938990 GAGAGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 1939049 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || ||| ||||||||| ||| | || || | ||| Sbjct 1939050 GGAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCA 1939109 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || || || |||||||| || | ||||| | ||| || |||||| Sbjct 1939110 ACTTCAAGGGTGATAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCATT 1939160 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| |||||| | || || || | || | ||||| ||||| |||||| Sbjct 1939158 ATTCCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCA 1939217 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || | ||| || |||||||| || | | ||| ||||| || Sbjct 1939218 GAGAGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGG 1939277 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||||||||| ||||| ||||| || || | || || | ||| Sbjct 1939278 GGAATTCCCTCTTTATCTTGAATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCG 1939337 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||||||||| || | || || | ||| |||||||| Sbjct 1939338 ACTTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| | |||| |||| || | |||||| ||||||||||| || | Sbjct 1939433 GATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGTTTTCCAGCAAAGATCAAACG 1939492 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || ||||| || || || |||||||| ||||| |||||| ||| ||||| |||| Sbjct 1939493 TTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTCTCGATAGT 1939552 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || | ||| || || || || |||||||| ||||| | ||||| | ||| || || Sbjct 1939553 GTCAGAAGCTTCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTG 1939612 Query 192534 CAT 192536 ||| Sbjct 1939613 CAT 1939615 >seq5499 Length=536236 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| |||| | || || |||||||||||||||| || || ||| ||||| || || Sbjct 171335 ACCGCCTCGCAAGCGCAACACTAAATGTAAAGTAGATTCCTTCTGGATGTTATAGTCCGA 171276 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| |||| | || |||||||| |||||||||||||| ||||| || ||||| || || Sbjct 171275 TAAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGCTGATCTGGCGG 171216 Query 192429 TATTCCT 192435 |||||| Sbjct 171215 AATTCCT 171209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984406386738600