Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5320 143 5e-29 seq5634 132 9e-26 seq5499 93.3 8e-14 >seq5320 Length=807335 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||||||||| | ||| | ||| | |||| |||||| ||||||||| || ||| Sbjct 503245 CCACCTCTAAGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGAT 503186 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| ||| | || || | || || || || ||||| | ||| ||||| || || || Sbjct 503185 AAAGTCCGTCCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGA 503126 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||||||||| ||||| |||||||| || || ||||| | || || Sbjct 503125 ATGCCTTCTTTATCTTGAATTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGACC 503066 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||||||||| | ||||| | || |||||||| Sbjct 503065 TCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 503019 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || |||||||| |||| || || |||||| || || Sbjct 502336 ATACCACCACGTAGACGAAGAACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCA 502277 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||| ||||| || || |||||||| || || || Sbjct 502276 GAAAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGG 502217 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| ||||| || ||||| || || ||||||| || Sbjct 502216 GGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCA 502157 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| || || ||||||||||| | || || ||||| Sbjct 502156 ACTTCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| | || || ||||| || || | ||||| ||| || || || Sbjct 502564 ATACCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCA 502505 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | ||||| || || || || |||||||| || || ||| Sbjct 502504 GAAAGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGT 502445 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| ||||| ||| ||||| ||||| ||||||| || Sbjct 502444 GGGATTCCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCA 502385 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||| || || ||||||||||| | ||| || ||||| Sbjct 502384 ACTTCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| || ||||| || || |||||||| || || || || ||||||||||| Sbjct 501577 TCTTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTG 501518 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| ||| ||||| || || || |||| || ||||| | || ||| Sbjct 501517 TCTTGAATTTTAGCTTTGACATTCTCGATCGTGTCCGACGCCTCAACTTCCAATGTGATG 501458 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || | ||||| | ||| ||||||||| Sbjct 501457 GTCTTTCCTGTCAGGGTTTTGACGAAAATCTGCATT 501422 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | || | || ||||| || || | ||||| |||||| || || Sbjct 501880 ATACCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCA 501821 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||| ||||| || || |||||||| || || || Sbjct 501820 GAAAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGG 501761 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| ||||| || ||||| || || || |||| || Sbjct 501760 GGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCA 501701 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || ||||| || || || | ||||| | ||| || |||||| Sbjct 501700 ACTTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATTTGCATT 501650 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| | || || ||||| || || | || || |||||| ||||| Sbjct 503020 ATACCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCA 502961 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||| || || || || || ||||| || || || Sbjct 502960 GAAAGTGTACGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGA 502901 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 ||||||||||| || || || ||||| ||| ||||| || || || |||| || Sbjct 502900 GGTATTCCTTCCTTGTCCTGAATTTTGGCTTTAACATTCTCGATCGTGTCCGACGCCTCA 502841 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||| || || || ||||| || | ||| || ||||| Sbjct 502840 ACTTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 502791 >seq5634 Length=4821945 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||||||||| ||||| || | || | ||||| || || ||||| Sbjct 1938246 ATACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCA 1938305 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || |||| |||||| || || ||||| | | |||||| || ||| Sbjct 1938306 GAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGT 1938365 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || ||||| || ||||| || |||||||| | ||| Sbjct 1938366 GGAATTCCTTCTTTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCG 1938425 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| |||||||| |||||||| || | ||||| | ||| || |||||| Sbjct 1938426 ACTTCGAGAGTAATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938476 Score = 132 bits (146), Expect = 9e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| || | || || | || |||| |||||| || || ||||| || | | Sbjct 1938522 ATATTGTAATCGGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAAACGC 1938581 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || ||||| ||||||||||||||||| ||||| ||||| || || || Sbjct 1938582 TGTTGATCCGGTGGAATTCCTTCTTTATCTTGGATTTTGGCCTTTACGTTTTCAATGGTG 1938641 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| | ||| ||||| ||||||||||||||||| || | ||||| | ||| || ||| Sbjct 1938642 TCTGAAGCTTCGACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGC 1938701 Query 172068 ATT 172070 ||| Sbjct 1938702 ATT 1938704 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| ||| || | || ||||| | |||| ||||| || ||||| || Sbjct 1938702 ATTCCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCC 1938761 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | | |||| || || |||||||||||||| || || | || |||||||| Sbjct 1938762 GAGAGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGA 1938821 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || ||| |||||| || ||| || || || | ||| Sbjct 1938822 GGAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCA 1938881 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| ||||||||||| || | ||||| | ||| || |||||| Sbjct 1938882 ACTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938932 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||| ||||||||||| || || || | || |||||||| || || ||||||| Sbjct 1939003 CGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTT 1939062 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || ||| ||||||||| ||| || || || | ||| ||||| || || | Sbjct 1939063 TGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGGGTGA 1939122 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | |||||||| || | ||||| | || || |||||| Sbjct 1939123 TAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCATT 1939160 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| ||| || | || || || | || | ||||| |||||| ||||| Sbjct 1939158 ATTCCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCA 1939217 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || | ||| || ||||||||||| | | ||| || || || Sbjct 1939218 GAGAGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGG 1939277 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||||||||| ||||| ||||| || || || || || | ||| Sbjct 1939278 GGAATTCCCTCTTTATCTTGAATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCG 1939337 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||||||||| || | || || | || |||||||| Sbjct 1939338 ACTTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 >seq5499 Length=536236 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171828 TTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAA 171887 ||| ||||| | ||| |||| | || || |||||||||||||||| || || Sbjct 171349 TTTCGTTTCTTGGCACCGCCTCGCAAGCGCAACACTAAATGTAAAGTAGATTCCTTCTGG 171290 Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||| || ||||||| || |||| |||||||| ||||||||||| || ||||| Sbjct 171289 ATGTTATAGTCCGATAAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTT 171230 Query 171948 TGTTGGTCAGGTGGTATTCCT 171968 || || || || || |||||| Sbjct 171229 TGCTGATCTGGCGGAATTCCT 171209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905069970328800