Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4718 109 2e-18 seq5055 98.7 3e-15 >seq4718 Length=5897223 Score = 109 bits (120), Expect = 2e-18 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 60143 GTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATT 60200 |||||||| || ||||||| || | ||||| ||||| ||| | || || |||| Sbjct 5377545 GTGAAAATGTA--TCTCGGACTGGCGGAATCCTTTCCACCAGCAAGTCTTGTACCGAATT 5377602 Query 60201 GTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAA 60260 | ||| | ||||| || |||||||||||||| || |||||||| || |||||| || Sbjct 5377603 GACCGATGGGCTGTAACAGATTAATGTTGTTGCTACCCACGAAATTCTGCGCGAGATTAA 5377662 Query 60261 CAATAG-CACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATAT 60319 | || | | ||| | | | ||||||||||||||| |||||||||| | |||| || Sbjct 5377663 CTATGGTCGCCA-TCAGGGATGTTTCACCGTGATGATAAGCAGAATGTTCGGCAACAGAT 5377721 Query 60320 CCACTGAATTGTGCGACTTTAATTTCG 60346 || ||||| |||||||| | |||| Sbjct 5377722 CCCGCCAATTGCGCGACTTTCACTTCG 5377748 Score = 102 bits (112), Expect = 2e-16 Identities = 169/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || ||||| ||||| || || ||||||| || || ||||||||| | Sbjct 5577884 AAACAAGTCTCTAACACGCCGGGCACCTTGACCAACGAGAATCTCATCAAATTCAGGGCC 5577825 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | || || | ||||| |||| ||||| || || ||||| | ||| | | |||||| Sbjct 5577824 TGCCACGTGGAAGAATGGTACACCGGCTTCTCCAGCGACTGCACGCGCTAACAATGTCTT 5577765 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA---GCAGA 289265 |||||||| || || || |||| | |||||||| || | ||| | ||| || || Sbjct 5577764 TCCTGTTCCTGGCGGACCGACTAACAATACTCCCTTCGGCAACTTTCCACCAAGGGCGGA 5577705 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | |||| ||||| |||||||||||||||| | | | |||||| | |||||||| Sbjct 5577704 ---AAATTTATCAGGATTCTTTAAAAATTCTACTACATTCAGAAGTTCTTGCTTTGCCTC 5577648 Query 289326 ATC 289328 ||| Sbjct 5577647 ATC 5577645 >seq5055 Length=3208138 Score = 98.7 bits (108), Expect = 3e-15 Identities = 169/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| || || |||||||||||||| |||||||| || || ||||| || ||| Sbjct 1598396 TCCATAGCTTTTATCAAACGACGCTGAATGTAACCAGTCTCAGCCGTCTTTACGGCGGTA 1598455 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| ||||||||||||| || || ||| | | ||| || ||| || || Sbjct 1598456 TCGATAAGACCTTCACGACCACCCATTGCGTGAAAGTAGAACTC-GGAGGGCGTGAGACC 1598514 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | | || |||| || |||||||| | ||| || || ||| ||| | || Sbjct 1598515 AGCGAGATACGAATTCTCGACAAAACCACGGGACTCTGGTCCATAGTCATCCTTAATGAA 1598574 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 |||||||| || || || | || | || || || || || |||||||| ||||| Sbjct 1598575 ATGTGGCAGCGTTCTCTTACGGAAACCAAAGGGTATCCGTTTACCTTCAACGTTTTGCTG 1598634 Query 302814 TCC 302816 || Sbjct 1598635 GCC 1598637 Score = 95.1 bits (104), Expect = 4e-14 Identities = 120/162 (74%), Gaps = 11/162 (7%) Strand=Plus/Plus Query 303637 TGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCCGCAACG-TT 303695 ||||||||||| || || |||||||| |||||||| |||||| |||| | || | || Sbjct 1599491 TGTAAATTCATTTCGTCCCCGTCAAAGTCAGCATTGTACGGCGATGTG-CAGCTTAGATT 1599549 Query 303696 CATCCGGAAAGTATCACCCTGCATCA---TAACACGGGCTTTATGACACATCATAGACAT 303752 ||| ||||| ||| | | | | || ||||||| ||||| ||||||| ||| Sbjct 1599550 CATGCGGAATGTACTCCACGGAAGCACCTTAACACG------ATGACCCATCATACTCAT 1599603 Query 303753 TCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACC 303794 |||||||||| |||||||||||||| | ||| | ||||| Sbjct 1599604 CTTGTGTAGAGTAGGCTGACGATTGAAGATTACGAGATCACC 1599645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471707546678732