Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5738 91.5 2e-12 >seq5738 Length=4927432 Score = 91.5 bits (100), Expect = 2e-12 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 1254374 CACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACG 1254433 ||| || || || ||||| || | |||||| ||| ||||| |||| |||||||| Sbjct 161165 CACAGCAGTTTGAATCTCCCGAGACGTGATCGTCGAGCGTTTGTTGTAGTGTGCCAGACG 161106 Query 1254434 GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACAT 1254493 ||||| | |||| || |||| | ||||||||||| ||||||| ||| Sbjct 161105 AGACGCCTCAGCTGCGATACGTTCGAAAACATCGTTGACAAAGCTATTCATGATGCTCAT 161046 Query 1254494 CGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||| ||||||| || ||| ||||| || ||||| ||||||||||||||| Sbjct 161045 AGCCTTGCTGGAGATTCCGGTGTCAGGGTGGACTTGCTTCAGCACCTTGTAGATG 160991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106660270510012