Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4511 233 2e-56 seq5634 113 4e-20 seq5320 107 2e-18 >seq4511 Length=1767931 Score = 233 bits (258), Expect = 2e-56 Identities = 296/405 (73%), Gaps = 4/405 (1%) Strand=Plus/Plus Query 34254 GCCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGAC--ACG 34311 ||| |||| || ||||| || || ||||| |||| || ||| || || || || Sbjct 472968 GCCATGATGTCCACATGCCTTACAACCCTGTGAGATCGTGCCCTTCTT--CGAACTGACC 473025 Query 34312 ATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCA 34371 || | || || ||||| || || || |||| || | ||| | || || ||||||||| Sbjct 473026 ATTAATTCGGTTTCCGGATTATCGCAGGCCGGGCAAAGAACATATTTTCGAATGAAACCA 473085 Query 34372 TCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTT 34431 || |||||||| |||||||| | ||||| ||||||||||| ||||| |||||||| Sbjct 473086 TCCAGCAGGTCTTGTAACTTTGTTGCATCGTGCGAGCCGTTGACAATGAAGCGTTCGTTC 473145 Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 ||| | || | |||||| || ||||||| |||||| ||||| ||||| ||||| || | Sbjct 473146 TTGAAGTCAAACTGCGTCTGAGCGCCCAACTCGCAACCGAAATACTTGGTCGGATATGTA 473205 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 |||||||| || | |||||| || | || ||||||||| || || ||||| || || Sbjct 473206 GCCGGACGACCGATCGCCTTCGCCACATCCACCATGTTGACAATCACTGTCTTAATACCA 473265 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || ||||| ||||| ||||| || || |||||||| || || || || || || || Sbjct 473266 TTTCCCTTGCCTTCCACCTTCGCCTGAATCCGCGGCATCTTATAACGATAAAAAGCATCG 473325 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTT 34656 |||||||| || ||||| || ||||||| ||| | | |||| Sbjct 473326 CTGACATTGCGATTGACGTTTACGCTCCCCATGGTGACCGATGTT 473370 >seq5634 Length=4821945 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 ||||||||| || || |||||| | ||||| ||||| ||||| ||||| || ||| | Sbjct 1938476 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACGATTACTCTCGAAGTCGAAGCTTC 1938417 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | ||||| ||| | || || || || ||||||||||| | || ||||| Sbjct 1938416 A-GATACCATCGAAAATGTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGATC 1938358 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| | || |||| || || ||||| ||||| |||| |||||| | | ||||||| Sbjct 1938357 AACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACA 1938298 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||| ||||||||||| || | ||| | || ||| |||| || || || Sbjct 1938297 ACATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGCGGAGG 1938249 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAA-ACGGAGCCTG 110330 ||||||||| || || |||||| | ||||| ||||||||||| ||||| || ||| | Sbjct 1938704 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 1938645 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | ||||| || || || |||||||| | || ||||| Sbjct 1938644 A-GACACCATTGAAAACGTAAAGGCCAAAATCCAAGATAAAGAAGGAATTCCACCGGATC 1938586 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| | | |||| || || ||||| ||||| |||| |||||| | | ||||||| Sbjct 1938585 AACAGCGTTTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCCGATTACA 1938526 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 | || || |||||||| || | ||| |||| | | || ||||| |||| Sbjct 1938525 ATATCCAGAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGGAA 1938475 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTG 110330 ||||||||| || || |||||| | ||||| |||||||| || | ||| || |||| Sbjct 1938932 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 1938873 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 || || | | | |||||| ||||| |||||||||||| | || || | Sbjct 1938872 T-GACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACC 1938814 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | ||| | | || | ||| ||||||||| | ||||| | || ||| | |||| || | Sbjct 1938813 AGCAACGTTTGATCTTTGCTGGTAAACAGTTAGAGGACGGTAGGACACTCTCGGACTATA 1938754 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||| |||||||||||||| | || |||| | | || ||||| |||| Sbjct 1938753 ACATCCAAAAAGAATCTACCCTTCATTTGGTTCTGCGTCTTCGAGGAGGAA 1938703 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||| | || || |||||||| ||| ||||| || || Sbjct 1939387 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTCG 1939328 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | ||||| || ||| || ||||| || | ||| |||||| Sbjct 1939327 GACACCATTGAAAACGTAAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCGGATCAG 1939268 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || |||| ||| || || || || || |||| |||||| | | |||||||| Sbjct 1939267 CAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTACAAT 1939208 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||| || | ||| |||| | | || ||||| |||| Sbjct 1939207 ATTCAAAAAGAATCCACACTTCACTTGGTTCTTCGTCTTCGAGGAGGAA 1939159 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 110264 AGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACG 110323 ||||||| |||||||| ||||| ||||| | || || |||||||| ||| | || | Sbjct 1939624 AGATTTATCATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTG 1939565 Query 110324 GAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCC 110383 || || || ||| ||| | || ||| || || ||||||||||| | || Sbjct 1939564 GAAGCTTCTGACACTATCGAGAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCT 1939505 Query 110384 GTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCG 110443 ||||| ||| | | || | ||| || ||||| || ||||||| |||||| | | Sbjct 1939504 CCAGATCAGCAACGTTTGATCTTTGCTGGAAAACAACTAGAGGATGGCAGAACTCTTTCT 1939445 Query 110444 GATTACAACATTCAAAAAGAATCTACG 110470 || |||||||| || || ||||||||| Sbjct 1939444 GACTACAACATCCAGAAGGAATCTACG 1939418 >seq5320 Length=807335 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| ||||| || || ||||| || | ||| ||| | Sbjct 502335 ATGCAAATTTTCGTCAAAACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 502394 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | || ||| || ||| ||||| ||||| | || |||||| Sbjct 502395 GACACTATCGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGATCAG 502454 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | || || |||||||| || |||| | | ||| | | || |||||| Sbjct 502455 CAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAC 502514 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| |||||||| |||| || || || || || || Sbjct 502515 ATTCAAAAAGAATCCACGTTGCATTTGGTTTTGAGGCTTCGCGGCGG 502561 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||||||| | || || ||||| ||||| | || ||| || Sbjct 503019 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCA 503078 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | ||||| ||| ||| || ||||||||| | || |||||| Sbjct 503079 GACACGATCGAAAATGTAAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 503138 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| |||| ||||| || ||||| || |||| | || | | || || || Sbjct 503139 CAAAGACTGATTTTCGCGGGCAAGCAGCTAGAAGATGGACGGACTTTATCCGACTATAAT 503198 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| ||||| ||||| Sbjct 503199 ATTCAGAAAGAGTCTAC 503215 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||||||||| ||||| || || ||||| || | ||| ||| | Sbjct 502107 ATGCAAATTTTTGTCAAAACATTAACAGGAAAGACCATCACGCTGGAAGTTGAGGCGTCA 502166 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || || ||| ||||||||||| | ||| |||||| Sbjct 502167 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCAG 502226 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | || || ||||| || || |||| | ||| | | || ||||| Sbjct 502227 CAGAGATTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTACAAT 502286 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| |||||||| || || |||| Sbjct 502287 ATTCAAAAGGAATCTACCTTACATTTGGT 502315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412812236125148