Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5634 120 2e-22 seq5320 114 8e-21 seq4085 100 2e-16 >seq5634 Length=4821945 Score = 120 bits (132), Expect = 2e-22 Identities = 146/197 (74%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| || || | | |||| || ||||| ||||| || ||| Sbjct 1939425 TCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGTTTTCCAGCAAAG 1939484 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| |||||||| ||| | || | || || ||||| | ||||| |||||| || Sbjct 1939485 ATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTAGCTTTGAC--AT 1939542 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | ||| || || || |||| ||| ||||| ||||| |||||||| |||| Sbjct 1939543 TCTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTA 1939602 Query 34965 CAAAGATCTGCATGATA 34981 ||||||| ||||||||| Sbjct 1939603 CAAAGATTTGCATGATA 1939619 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||||||||| ||| || ||||| ||||||||||| | Sbjct 1938931 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTG 1938990 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | || |||| || || || |||||||||| ||||||||||| | | Sbjct 1938991 AGAGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 1939050 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || ||||| | || || ||| || | |||| | ||| || || | Sbjct 1939051 GAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAA 1939110 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| || || || |||||||| || || |||||||| ||||| Sbjct 1939111 CTTCAAGGGTGATAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 1939159 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| || || ||||| || || || || || | | |||| Sbjct 1939176 AGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTTCTGCCATCT 1939235 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || || ||||| || ||||| || | || | ||||| || || Sbjct 1939236 TCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATCT 1939295 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || ||| | | || | || || ||||| || | ||| ||||| Sbjct 1939296 TGAATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTT 1939355 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| || ||||||||||||||||||||| Sbjct 1939356 TTACCCGTAAGAGTCTTTACAAAGATCTGCATG 1939388 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||| |||| ||| || || || ||||||||||||| Sbjct 1938703 TTCCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCG 1938762 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | || || | || || || || ||||||| ||||||||||| | | Sbjct 1938763 AGAGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAG 1938822 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || ||||| | || || ||| ||| | |||| | ||| ||| || | Sbjct 1938823 GAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 1938882 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || ||||| || || ||||| || || || ||||| ||||| Sbjct 1938883 CTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938931 >seq5320 Length=807335 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 |||||||| || | ||| || ||||||||||| ||||| || || |||| |||| Sbjct 501634 AGGACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGTGTGCGACCATCT 501575 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| |||||||||| || ||||| || | || | || || ||||| Sbjct 501574 TCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTCT 501515 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || |||| || ||||| || || | || |||| Sbjct 501514 TGAATTTTAGCTTTGAC--ATTCTCGATCGTGTCCGACGCCTCAACTTCCAATGTGATGG 501457 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || ||||| || || || |||||||| Sbjct 501456 TCTTTCCTGTCAGGGTTTTGACGAAAATCTGCAT 501423 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | ||| || ||||||| |||| || ||||||||||| || || || | Sbjct 501423 TTCCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAG 501364 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | | || |||| ||||| |||||||| || ||||||| || ||||| || | | Sbjct 501363 ACAAGGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTG 501304 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || ||||| || | || ||| ||| || || || || | ||| ||||| Sbjct 501303 GAATGCCTTCCTTATCCTGGATCTTTGCTTTTAC--ATTCTCGATAGTGTCAGAAGCCTC 501246 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||| ||||||||||| || || | ||||| ||||| ||||||||| Sbjct 501245 AACTTCAAGAGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCATG 501194 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || |||||||| || ||||| || || |||| |||| || ||||| ||||| |||||| Sbjct 501841 TCTTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAG 501782 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| || | || | || || ||||| | ||||| ||||| || Sbjct 501781 ATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGAC--AT 501724 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || |||| || ||||| || || | || ||||||||||| || ||||| || | Sbjct 501723 TCTCGATCGTGTCGGACGCCTCAACTTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGA 501664 Query 34965 CAAAGATCTGCAT 34977 | || || ||||| Sbjct 501663 CGAAAATTTGCAT 501651 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||| || || || || || | || |||| || ||||| |||||||||||| Sbjct 502981 TCCTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCAAGTTGTTTTCCGGCGAAG 502922 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| | ||||| ||| | || | || |||||||| | ||||| ||| || || Sbjct 502921 ATCAACCTCTGCTGATCTGGAGGTATTCCTTCCTTGTCCTGAATTTTGGCTTTAAC--AT 502864 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || |||| || ||||| || || | || ||||||||||| || | ||||| | Sbjct 502863 TCTCGATCGTGTCCGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGA 502804 Query 34965 CAAAGATCTGCAT 34977 | || || ||||| Sbjct 502803 CGAAAATTTGCAT 502791 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| ||||| || ||||| || || |||| |||| || ||||| ||||| |||||| Sbjct 502297 TCCTTTTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAG 502238 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| || | || | || || ||||| | ||||| ||||| | Sbjct 502237 ATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTT 502178 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || ||||| || || | || ||||||||||| || | || || ||| Sbjct 502177 TCGATCGTGTCTGACGCCTCAACTTCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACA 502118 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 502117 AAAATTTGCAT 502107 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || |||||||| || ||||| || || |||| |||| || || || |||||||||||| Sbjct 502069 TCTTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAG 502010 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| || | || | || |||||||| | ||||| ||| || || Sbjct 502009 ATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTAAC--AT 501952 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || ||||| || || | || || |||||||| || | ||||| | Sbjct 501951 TCTCGATAGTGTCTGACGCCTCAACTTCCAGCGTGATTGTCTTTCCTGTCAATGTCTTGA 501892 Query 34965 CAAAGATCTGCAT 34977 | || || ||||| Sbjct 501891 CGAAAATTTGCAT 501879 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || |||||||| ||||| || || |||| |||| || || || |||||||||||| Sbjct 502525 TCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAG 502466 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| || | || | || |||||||| | ||||| ||| || || Sbjct 502465 ATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTAAC--AT 502408 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || ||||| || || | || ||||||||||| || | || || | Sbjct 502407 TCTCGATAGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTTAATGTTTTGA 502348 Query 34965 CAAAGATCTGCAT 34977 | || || ||||| Sbjct 502347 CGAAAATTTGCAT 502335 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| ||||| |||||||| || || |||| | || || ||||| || ||||||||| Sbjct 502753 TCCTTTTGAATATTATAGTCAGAAAGTGTGCGACCGTCTTCAAGTTGTTTCCCGGCGAAG 502694 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || | | |||||||| | || | || |||||||| | ||||| |||||| || Sbjct 502693 ATTAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTGAC--AT 502636 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || |||| || || ||||| || | || || || || || || || || || | Sbjct 502635 TCTCGATCGTGTCCGACGCTTCGACTTCCAGAGTAATTGTTTTACCGGTAAGCGTTTTGA 502576 Query 34965 CAAAGATCTGCAT 34977 |||| || ||||| Sbjct 502575 CAAAAATTTGCAT 502563 >seq4085 Length=6844556 Score = 100 bits (110), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 || || ||||| || || || | |||| |||| ||||| || || ||||||||||| Sbjct 2742648 TTTTGGATGTTGTAATCAGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 2742707 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 ||||| || || ||| | || | ||||||||||| | || || ||||| || || Sbjct 2742708 AGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGAC--ATTCT 2742765 Query 34910 --ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 || | ||| |||||| || || | ||| || || || ||||||||||| || || | Sbjct 2742766 CGATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCCGTGAGGGTTTTCACGA 2742825 Query 34968 AGATCTGCATG 34978 ||||||||||| Sbjct 2742826 AGATCTGCATG 2742836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325669634692484