Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq5634 127 3e-24 seq5320 114 2e-20 >seq5634 Length=4821945 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| |||||| | || || ||| | | Sbjct 1938474 TGCAAATCTTCGTGAAAACTCTCACCGGTAAAACGATTACTCTCGAAGTCGAAGCTTCAG 1938415 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| || ||||| || |||||||| |||||||| ||||||| Sbjct 1938414 ATACCATCGAAAATGTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAAC 1938355 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || || |||||| | || ||| ||||| | | ||||| || | Sbjct 1938354 AGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAACA 1938295 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || |||| ||||| |||||| | | ||||||| Sbjct 1938294 TCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGCGGAGGTA 1938247 Score = 105 bits (116), Expect = 1e-17 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| || ||| |||| || ||| | Sbjct 1938930 TGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTCTG 1938871 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| |||||| ||| || ||| |||||||||||||| || || || | Sbjct 1938870 ACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAGC 1938811 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| |||||||| ||||| || ||| || | | || ||||| | Sbjct 1938810 AACGTTTGATCTTTGCTGGTAAACAGTTAGAGGACGGTAGGACACTCTCGGACTATAACA 1938751 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| || | ||||| || | || | ||||||| Sbjct 1938750 TCCAAAAAGAATCTACCCTTCATTTGGTTCTGCGTCTTCGAGGAGG 1938705 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || ||||| || || |||| || ||| | | Sbjct 1939158 TGCAAATCTTTGTGAAAACTCTCACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTCTG 1939099 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||||||| ||| || ||| |||||||||||||| || || || | Sbjct 1939098 ACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAGC 1939039 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || |||||||| || || || ||| || | |||| ||||| | Sbjct 1939038 AACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAACA 1938979 Query 146212 TACAAAAAGAATCGAC 146227 | || |||||||| || Sbjct 1938978 TCCAGAAAGAATCCAC 1938963 Score = 87.8 bits (96), Expect = 3e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || | || || ||||| || || | || || ||| | | Sbjct 1939386 TGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTCGG 1939327 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| ||||| ||||| ||| |||||| || ||||| || ||||| | Sbjct 1939326 ACACCATTGAAAACGTAAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCGGATCAGC 1939267 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || |||||||| || || ||| | || ||| ||||| | | ||||| |||| Sbjct 1939266 AGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTACAATA 1939207 Query 146212 TACAAAAAGAATCGAC 146227 | ||||||||||| || Sbjct 1939206 TTCAAAAAGAATCCAC 1939191 >seq5320 Length=807335 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || || ||||| ||||| | || || || | | Sbjct 503020 TGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCAG 503079 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||||||||| ||||| ||| ||||||||||||||| |||||||||| Sbjct 503080 ACACGATCGAAAATGTAAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAAC 503139 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||| || || || || |||| ||| | || ||| | || ||||||| Sbjct 503140 AAAGACTGATTTTCGCGGGCAAGCAGCTAGAAGATGGACGGACTTTATCCGACTATAATA 503199 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||| || || | ||| | ||| | ||| | ||||| || Sbjct 503200 TTCAGAAAGAGTCTACACTTCATCTTGTACTTCGACTTAGAGGTGG 503245 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| || | ||||||||||||||||| || || || | || || || | | | Sbjct 502108 TGCAAATTTTTGTCAAAACATTAACAGGAAAGACCATCACGCTGGAAGTTGAGGCGTCA- 502166 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || ||||||| || ||||| ||| |||||||| ||||| || ||||| Sbjct 502167 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCAG 502226 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | || || || || |||||| | || ||| | | || | | || || ||| Sbjct 502227 CAGAGATTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTACAAT 502286 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || ||||| ||||| || | ||||| || Sbjct 502287 ATTCAAAAGGAATCTACCTTACATTTGGT 502315 Score = 87.8 bits (96), Expect = 3e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| ||| | ||||||||||||||||| || || || | || || || | | | Sbjct 502336 TGCAAATTTTCGTCAAAACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA- 502394 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || ||||| | ||||| ||| ||||| ||| || ||||| || ||||| ||||| Sbjct 502395 GACACTATCGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGATCAG 502454 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | || || || || ||||| | || ||| | || | | || || || Sbjct 502455 CAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAC 502514 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATT 146242 || ||||||||||| || | ||||| || || Sbjct 502515 ATTCAAAAAGAATCCACGTTGCATTTGGTTTT 502546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786109049161120