Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4793 275 5e-68 seq4827 185 7e-41 seq5022 118 8e-21 >seq4793 Length=379738 Score = 275 bits (304), Expect = 5e-68 Identities = 695/1044 (67%), Gaps = 12/1044 (1%) Strand=Plus/Minus Query 281442 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 281501 ||||||||||||| | ||| || |||||||| ||||| || || ||||| | || || | Sbjct 170482 TACCATTGGCATCGATATCGAAAGTGACTTCGATTTGCGGTACACCTCTAGGCGCTGGAG 170423 Query 281502 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 281561 | || || || | |||| | || || | ||||||||||| || | || || | Sbjct 170422 GAATACCCGTCAGCTCAAATTTGCCAAGGATGTTATTATCTTTCGTCATCGCTCTCTCTC 170363 Query 281562 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 281621 ||||| | | ||||| ||| | | |||||| || || || || ||||| ||||| Sbjct 170362 CCTCGTAGACCTGGATGAGCACTCCCGGTTGATTGTCGGAGTATGTGGTAAACG-TCTGG 170304 Query 281622 ATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 | | || | || || || ||||| || | ||| | ||||||||| || ||||| Sbjct 170303 GTCTGTTTCGTTGGTATCGTCGTGTTCCTCTTAATCAAGGTGGTCATAACGCCGCCAGCG 170244 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 || || | ||| | || | ||||| || || | | | | || ||| | || ||| Sbjct 170243 GTCTCAATACCCAATGATAACGGAGTCACGTCCAGCAAAAGTAAATCTTGGACTTCCTCA 170184 Query 281741 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 281800 | | ||| ||||| || || |||| || |||||||| |||||||| || || Sbjct 170183 GACTTGTCGCCATGCAGAATGGCCGCCTGAACTGCTGCACCATAAGCAACAGCCTCGTCC 170124 Query 281801 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACC 281860 ||||||| | || || |||| || || || || |||| | |||||| | ||| | Sbjct 170123 GGATTAATGGATTTGTTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGAAGCT-TCTGAAT 170065 Query 281861 TTA-GGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 281919 || || || | | || || || |||| || || || || || | |||||||| Sbjct 170064 TTTTGGTATCCTGGTGGAGCCACCGACTAGAACGATGCTGTGAACTTGAGCTTTATCCAT 170005 Query 281920 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACA 281979 || | ||| | | | || || || ||||| ||| |||||||| || | || Sbjct 170004 CTTCGCATCTCTAAGAGCCTTCTCCACAGGTTCGAGAGTGCTTCTAAACAGATCAGCGCA 169945 Query 281980 AAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAA 282037 || || || ||| | |||||||| || ||| | || || ||||| || || ||||| Sbjct 169944 GAGCTCCTCAAATCTGGCTCTAGT--GACCGACGTATAGAAATCAATCCCCTCAAACAAT 169887 Query 282038 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 282097 ||||| | ||||| | | || ||||| || | | | || || | || || Sbjct 169886 GAATCGATCTCAATGCTCGCCTGCGTCGACGAGCTCAACGTTCTCTTCGCTCTCTCGCAA 169827 Query 282098 GCTGTCCTTAGTCTTCGTAAGGCTTT--TGCTGATTGATTCAAATCTGTTTTATATTTTC 282155 || |||||||| | || | ||| | |||| | || | ||||||| | || ||||| | Sbjct 169826 GCAGTCCTTAGGCGTCTCAGAGCTCTCTTGCT-ACTGCT-CAAATCTTTCTTGTATTTCC 169769 Query 282156 TCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATT 282215 ||||||| |||| ||| | | || | || || ||||| ||||| || || | | Sbjct 169768 TCTTGAATTCTTGCACAAAGTGGTTCACCATTCGGTTGTCAAAGTCTTCGCCACCAAGAT 169709 Query 282216 TAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAA 282275 || | || | ||| | | || | ||| | ||||| || | | ||||| | | Sbjct 169708 GCGTGTCGCCAGCCGTGGACTTCACCTCGAAGATACCATCCTCGATCGTCAAAATCGACA 169649 Query 282276 CATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTT 282335 ||||| ||| |||||||||| ||||| || || |||||| |||| || |||| Sbjct 169648 CATCAAAGGTACCACCACCCAAGTCAAAGATCAGAACATTCTTTTCACCTGCTGCCTTTT 169589 Query 282336 TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAA 282395 |||| ||||||||||| | || || || || || || || || ||||| | ||| || | Sbjct 169588 TATCGAGACCATACGCTATCGCGGCGGCTGTGGGCTCGTTTATTATTCTGAGAACGTTCA 169529 Query 282396 GACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAG 282455 |||||||| || ||||| || || |||||||| || ||||| || ||||| || | Sbjct 169528 AGCCAGCAATAGCGCCGGCATCCTTTGTCGCTTGTCTCTGAGAATCATTGAAATAAGCCG 169469 Query 282456 GAACAGTAATAACGGCATCTGTTA 282479 | ||||| || ||||||| ||||| Sbjct 169468 GCACAGTGATGACGGCATTTGTTA 169445 >seq4827 Length=7866672 Score = 185 bits (204), Expect = 7e-41 Identities = 782/1220 (64%), Gaps = 24/1220 (2%) Strand=Plus/Plus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 ||||| || ||||| || ||||| | || ||||| || ||||| ||||| || || | Sbjct 6099605 ACATTGAGGATACCGTTCGCATCAATGTCGAATGTCACCTCAATCTGAGGAACTCCACGA 6099664 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 | || ||||| || || | | ||| | ||||| |||||| || || || | Sbjct 6099665 GGTGCTGGTGGAATACCGCTAAGCTCGAATTTGCCCAGTAGATTATTGTCCTTGGTCATG 6099724 Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611 || ||||| || | | || || || ||| |||||| || | |||||||| Sbjct 6099725 GCGCGCTCACCTTCATATACCTGAATCAACACGCCAGGTTGATTGTCGGCGTAAGTTGTG 6099784 Query 281612 AATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATA 281671 || | | | || || || || || || || | ||| | |||||| | | Sbjct 6099785 AAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTATTCCTCTTAATGAGCGCGGTCATGACA 6099844 Query 281672 CCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 281731 ||||| || || || | ||| ||||| || |||||||| || | | | | | ||| Sbjct 6099845 CCACCGGCAGTCTCAATACCCAGAGAGAGCGGAGTGACGTCGAGCAAAAGCAAGTCTTGC 6099904 Query 281732 AGTTTTTCATCAGTTTGACCAAC----AAGAATAGCTGCTTGAATAGCAGCACCATATGC 281787 | | | || | || | || | |||| |||| || || | || || || ||||| Sbjct 6099905 ACCT---CCTCGGATTTATCACCGTGCAAGA-TAGCCGCCTGTACTGCCGCGCCGTATGC 6099960 Query 281788 AACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAA 281846 ||||| ||||||||||| | || || || || | ||| |||||||| || | ||| | Sbjct 6099961 CACAGCCTCATCAGGATTGATAGATTTGTTGAGCTCTTTGCCATTGAAGAAGTCTTGCAG 6100020 Query 281847 GAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCT 281906 || || | | ||| ||||| || | || ||||| || || || || || || | | Sbjct 6100021 GAGCTTCT-GAATCTTGGGAATTCGTGTAGAGCCTCCGACCAAAACGATATCGTGGATTT 6100079 Query 281907 GTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAA 281966 | | ||| |||| || | || | ||||||||| ||||||||| | | | | Sbjct 6100080 GGGCTTTGTCCATCTTGGCGTCGCGCAGCGATTTTTCAACAGGTTCAAGAGTACCGCGGA 6100139 Query 281967 ACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTC 282026 | | || | || ||||| ||||| ||||| || | | | | |||| |||| Sbjct 6100140 AAAGATCGGCGCAGAGTTCCTCGAAACGAGCTCGGGTGATGGAGGTGTAGAAATCGATTC 6100199 Query 282027 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 282086 |||| |||| ||||| | || || | | || || || || || || | ||| || | Sbjct 6100200 CTTCATACAATGAATCGATCTCGATGCTGGCCTGGGTGGAGGATGACAGGGTACGCTTGG 6100259 Query 282087 CACGTTCACATGCTGTCCTTAGTCTTCGTAAG---GCTTTTGCTGATTGATTCAAATCTG 282143 ||||||| || || || | || | || ||| || ||| | | | | |||||| Sbjct 6100260 CACGTTCGCAGGCCGTGCGAAGACGACG-AAGTGCGCGTTTATT--TGAAGTTAAATCTT 6100316 Query 282144 TTTTATATTTTCTCTTGAAAT-CTTCAACACACCATGTTACAAGACGATTATCAAAATCT 282202 | || ||||| | ||| || | || || | | || | || | ||| ||||| || || Sbjct 6100317 TCTTGTATTTACGCTTAAATTCCTGCACGAAATGAT-TAACCATACGGTTATCGAAGTCC 6100375 Query 282203 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 282262 || || ||||| | ||||| ||| | ||||| | || | ||| | |||||||| | Sbjct 6100376 TCGCCACCCAAATGAGTATCTCCAGCCGTAGACTTGACCTCGAAGATACCATCTTCGATG 6100435 Query 282263 GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 282322 | || | | || || || |||||||| | |||||| ||||| || ||| ||| Sbjct 6100436 GTCAGGATGGACACGTCGAAAGTGCCACCACCGAGATCAAAGATAAGGACGTTCCGTTCG 6100495 Query 282323 TTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 | ||| || || || |||||||| |||| || || || || || || || |||| Sbjct 6100496 CCG--GTGGCCTTCTTGTCGAGACCATATGCAATCGCGGCGGCGGTGGGCTCGTTGATAA 6100553 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440 | | ||| ||||| | || | || | || || || ||||| || || | || || | Sbjct 6100554 TACGCAATACATTTAAGCCCGAGATAGTACCAGCGTCCTTAGTTGCCTGACGCTGCGAGT 6100613 Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGC 282500 |||| || || || || || || || || || | || || || || | ||| || Sbjct 6100614 CGTTGAAGTAAGCGGGGACGGTGATCACAGCGTTAGTGACAGTCTTGCCTAAATATGCCT 6100673 Query 282501 TTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG-C 282559 ||| |||| |||||||| ||| | ||| || | || ||| || ||| | | | Sbjct 6100674 CTGCAGTTTCCTTCATTTTTACTAAGACCATCGAACTCACTTCTTCAGG-GAAGAAAGTC 6100732 Query 282560 TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTA 282619 || | || || ||| ||||| || | ||| ||| || | |||| || || || Sbjct 6100733 TTCGTCTCTCCTTTGTATTGTACTTGAATCTTTGGCTTACCACTATCATTTATTACGGTA 6100792 Query 282620 AATGGCCAATATTTCATATC 282639 || ||||||| |||||| || Sbjct 6100793 AAGGGCCAATGTTTCATGTC 6100812 Score = 98.7 bits (108), Expect = 7e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 ||||| || || | ||||| | || |||||| ||||| || ||||| || ||| || Sbjct 6102032 AAAATGGTGTTATTAGGATTCATGGCGACTTGATTCTTGGCGGCGTCTCCGATGAGACGT 6102091 Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 282811 || || || ||||| | ||||| || || ||||| || || ||||| || || ||| Sbjct 6102092 TCGGTTTCCGTAAAGGCTACATAACTGGGCGTCGTGCGGTTGCCCTGATCGTTGGCGATA 6102151 Query 282812 ATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATA 282871 || || ||||| |||| ||| | || || || || ||||||| |||||||||||| Sbjct 6102152 ATCTCGACTTTGCCATGTTGGAAGACGCCAACGCACGAGTAAGTTGTGCCTAAATCAATA 6102211 Query 282872 CC 282873 || Sbjct 6102212 CC 6102213 >seq5022 Length=6518063 Score = 118 bits (130), Expect = 8e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| |||| | |||||| | ||||| |||| ||||| |||||||| |||||||| | Sbjct 397889 TTTATCTTCTTGTTTATCCATTCCATAAGCAAGTGCAGCTGCAGTTGGCTCATTAATTAC 397830 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | | |||||| | |||||||| || ||||| || || ||||||| ||| ||||| Sbjct 397829 ACGAAGAACATTCAATCCAGCAATCTGACCAGCATCCTTTGTTGCTTGTCGTTGAGAATC 397770 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 |||||||| || || ||||||||||| |||| | ||||| Sbjct 397769 ATTAAAATACGCTGGTACAGTAATAACAGCATTTTTTACT 397730 Score = 107 bits (118), Expect = 1e-17 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || || ||||| || ||||||||||| |||||||||| |||||||| || || ||| Sbjct 397867 CCATAAGCAAGTGCAGCTGCAGTTGGCTCATTAATTACACGAAGAACATTCAATCCAGCA 397808 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || | | ||| ||| |||||||||| || | ||||||||||| |||||||||||| Sbjct 397807 ATCTGACCAGCATCCTTTGTTGCTTGTCGTTGAGAATCATTAAAATACGCTGGTACAGTA 397748 Query 86239 ATAACTGCTTTATT 86252 ||||| || || || Sbjct 397747 ATAACAGCATTTTT 397734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740343877062936