Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5320 96.9 3e-15 seq5634 82.4 7e-11 >seq5320 Length=807335 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || ||||| || | ||| ||| | || || || ||||| || Sbjct 501619 GTGGATTCTTTCTGAATGTTGTAGTCAGAAAGTGTGCGACCA-TCTTCAAGTTGCTTTCC 501561 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | | |||||| || || ||||| ||||| ||||| ||| ||| |||| Sbjct 501560 AGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTCT-TGAATTTTAGCTT 501502 Query 133583 -GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 || | ||| | |||||| | | ||| || || | |||| ||| || || ||||| | Sbjct 501501 TGACATTCTCGATCGTGTCCGACGCCTCAACTTCCAATGTGATGGTCTTTCCTGTCAGGG 501442 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 501441 TTTTGACGAAAATCTGCAT 501423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | ||||| || ||||| ||||||||||| | ||| |||| || || | Sbjct 502996 AAATGCAATGTGGATTCCTTCTGAATATTGTAATCAGAAA--GTGTACGACCATCTTCAA 502939 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | || || || ||| | || | || |||||| || ||||| || ||||||||||| ||| Sbjct 502938 GTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGTATTCCTTCCTTGTC-CTGA 502880 Query 133573 TCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| |||| | | | ||| | |||||| | | ||| || || | |||| ||| || Sbjct 502879 ATTTTGGCTTTAACATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTGATGGTCTTT 502820 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||| || || |||||||| ||||| Sbjct 502819 CCTGTCAATGTCTTGACGAAAATTTGCAT 502791 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| ||||| || ||| | || | | | || || ||||||||||| Sbjct 503215 GTAGACTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCA-TCTTCTAGCTGCTTGCC 503157 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 |||| |||| || | || || |||||||| |||||||| || || ||| ||| || | Sbjct 503156 CGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCT-TGAATTTTCGCCT 503098 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | |||||| | | ||| || || | || | ||||| || || |||| Sbjct 503097 TTACATTTTCGATCGTGTCTGAAGCCTCGACCTCCAGCGTAATAGTTTTACCAGTGAGAG 503038 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || ||||||||||| Sbjct 503037 TTTTGACAAAAATCTGCAT 503019 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| |||||||| |||||||| || | ||| | | | || ||||| Sbjct 502084 AAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCA-TCTTCGAG 502026 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | || | | |||||| || || ||||| ||||||||||| ||| Sbjct 502025 CTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTC-TTGAA 501967 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | | ||| | ||||| | | ||| || || | |||| || || | Sbjct 501966 TTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAGCGTGATTGTCTTTC 501907 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || |||||||| ||||| Sbjct 501906 CTGTCAATGTCTTGACGAAAATTTGCAT 501879 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| || || || || ||||| || || | ||| ||| ||| || || Sbjct 502768 AAATGCAAGGTAGATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGACC-GTCTTCAAG 502710 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| | || | || ||||||||| |||||||| ||||||||||| ||| Sbjct 502709 TTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTC-TTGAA 502651 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | ||| | |||||| | | || || || | || | ||||| | Sbjct 502650 TTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACTTCCAGAGTAATTGTTTTAC 502591 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || ||||| || ||||| ||||| Sbjct 502590 CGGTAAGCGTTTTGACAAAAATTTGCAT 502563 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| ||||||||||| || || | | | || || || Sbjct 501400 AAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAGACAAGGTACGTCCA-TCTTCCAG 501342 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | |||||||| || || || ||||||||||| || ||| Sbjct 501341 CTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGAATGCCTTCCTTATCCTGGAT 501282 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| || | | ||| | ||||| | | ||| || || | || | ||| || || Sbjct 501281 CTTTGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTCCC 501222 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGG 133662 |||| || || || ||||||||||||| Sbjct 501221 AGTCAATGTCTTCACAAAAATCTGCATGG 501193 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| ||||| || || ||||| || | ||| | | | || ||||| Sbjct 502540 AAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGGCCA-TCTTCGAG 502482 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | || | | |||||| || || ||||| ||||||||||| ||| Sbjct 502481 CTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTC-TTGAA 502423 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | | ||| | ||||| | | ||| || || | |||| ||| || | Sbjct 502422 TTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTTTC 502363 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || | ||||| |||||||| ||||| Sbjct 502362 CTGTTAATGTTTTGACGAAAATTTGCAT 502335 >seq5634 Length=4821945 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| ||||| || ||||||||||| | || || || || |||||||| Sbjct 1939191 GTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTTCTGCCATCTTCAAGTTGCTTGCCA 1939250 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582 || |||| || |||||||| || || || || || || || || ||| ||| | ||| Sbjct 1939251 GCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATC-TTGAATTTTGGCCTT 1939309 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | | || || |||| ||||| |||||| || || ||||| Sbjct 1939310 TACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTTTTACCCGTAAGAGT 1939369 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 ||||| || ||||||||| || Sbjct 1939370 CTTTACAAAGATCTGCATGCCT 1939391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483385534452640