Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5320 113 3e-20 seq5634 109 4e-19 >seq5320 Length=807335 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || |||||||| | ||| |||||||| |||||||| || || |||||||| | || Sbjct 502546 AAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGGCCATCT 502487 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | ||||||||||| || ||||| | ||||||||| | || | ||||| ||||| Sbjct 502486 TCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCT 502427 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 |||||| | || ||||| || | ||||| | || || || | |||||| || Sbjct 502426 TGAATTTT-GGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAACGTGATGGT 502368 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || |||||||| ||||| || || || |||||| Sbjct 502367 CTTTCCTGTTAATGTTTTGACGAAAATTTGCATA 502334 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||||| || || ||||| || ||||| || || Sbjct 502334 ACCACCACGTAGACGAAGAACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGA 502275 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||||||| || || ||||| | ||||||||| | || Sbjct 502274 AAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGG 502215 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| |||||| | | |||| || | ||||| | || | Sbjct 502214 AATTCCTTCTTTGTCTTGAATTTT-GGCCTTGACATTTTCGATCGTGTCTGACGCCTCAA 502156 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||| || || |||||||| ||||| ||||| || |||||| Sbjct 502155 CTTCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACAAAAATTTGCATA 502106 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||||| | |||||||| | ||| ||||| || || ||||| || || Sbjct 502106 ACCACCACGTAAACGGAGAACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGA 502047 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||||||||| || ||||| | ||||||||| | || Sbjct 502046 AAGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGG 501987 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| |||||| | || ||||| || | ||||| | || | Sbjct 501986 GATTCCTTCCTTGTCTTGAATTTT-GGCTTTAACATTCTCGATAGTGTCTGACGCCTCAA 501928 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||| || || ||||| || || || || || || |||||| Sbjct 501927 CTTCCAGCGTGATTGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCATA 501878 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || |||||||| | ||| || || || || |||||||| || ||||| || | || Sbjct 503002 AAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCAGAAAGTGTACGACCATCT 502943 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||||||||| || ||||| | |||||||||| | || | ||||| ||||| Sbjct 502942 TCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGTATTCCTTCCTTGTCC 502883 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 |||||| | || ||||| || | ||||| | || || || | |||||| || Sbjct 502882 TGAATTTT-GGCTTTAACATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTGATGGT 502824 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || ||||| || || || || || || |||||| Sbjct 502823 CTTTCCTGTCAATGTCTTGACGAAAATTTGCATA 502790 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||||| | |||||||| | ||| ||||| || || ||||| || || Sbjct 501878 ACCACCACGTAAACGGAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGA 501819 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||||||| || || ||||| | ||||||||| | || Sbjct 501818 AAGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGG 501759 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| |||||| | | |||| || | |||||| | || | Sbjct 501758 AATTCCTTCTTTGTCTTGAATTTT-GGCCTTGACATTCTCGATCGTGTCGGACGCCTCAA 501700 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || ||||| | ||||| || || || ||||| Sbjct 501699 CTTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATTTGCAT 501651 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||| ||| | ||| ||||| || |||||||| || || Sbjct 501649 CCACCACGTAGACGAAGGACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCAGAA 501590 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || || | ||| ||||| || || ||||| | ||||||||| | || Sbjct 501589 AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGG 501530 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| | || |||| || | ||||| | || || Sbjct 501529 ATTCCTTCTTTGTCTTGAATTTT-AGCTTTGACATTCTCGATCGTGTCCGACGCCTCAAC 501471 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || ||||| | ||||| || || |||||||| Sbjct 501470 TTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATCTGCAT 501423 Score = 86.0 bits (94), Expect = 4e-12 Identities = 167/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | ||| | | |||||||| ||||| || || || || Sbjct 501433 AAAATCTGCATTCCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATA 501374 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| || | || ||| | || |||| || ||||| ||||| |||||||||||| Sbjct 501373 TTGTAATCAGACAAGGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGC 501314 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 ||||| | || | ||||| || || || || || || |||| || | ||||| Sbjct 501313 TGATCAGGTGGAATGCCTTCCTTATCCTGGATCTT-TGCTTTTACATTCTCGATAGTGTC 501255 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || |||| || || || || || || || || || ||||| |||||||| Sbjct 501254 AGAAGCCTCAACTTCAAGAGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 501195 Query 33750 AGT 33752 || Sbjct 501194 GGT 501192 >seq5634 Length=4821945 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| || || || || | | || || | ||||||||| ||||| Sbjct 1939425 TCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGTTTTCCAGCAAAG 1939484 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||||||| ||||||||| | || | |||||||||||| ||||| | || |||| Sbjct 1939485 ATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTT-AGCTTTGACATT 1939543 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| | |||||| |||| ||||| ||||| || || | |||||||| Sbjct 1939544 CTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTAC 1939603 Query 33738 AAAGATCTGCAT 33749 |||||| ||||| Sbjct 1939604 AAAGATTTGCAT 1939615 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 ||||| || || || || ||| |||||||| ||||||||||| || || || | | Sbjct 1938261 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCA 1938320 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||| |||||| ||||| ||||||| |||||| ||||| | || | ||||||||| Sbjct 1938321 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTG 1938380 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || ||||| ||| |||| || | ||| || | ||| || || | || || Sbjct 1938381 TCCTGGATTTTGGCCTTC-ACATTTTCGATGGTATCTGAAGCTTCGACTTCGAGAGTAAT 1938439 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||||||| || | ||||| || ||||| ||||| Sbjct 1938440 CGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938475 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | ||||| || || ||| |||||||| || |||||||| ||| Sbjct 1939161 CCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAG 1939220 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || | ||| || || |||||||||| |||||||||||| | || Sbjct 1939221 AGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGA 1939280 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || ||||| || |||||| | | || | || | |||||| | ||| || Sbjct 1939281 ATTCCCTCTTTATCTTGAATTTT-GGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGAC 1939339 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| |||||||| || | || ||||||||||||||||| Sbjct 1939340 TTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||||||| || || |||||||| ||||| || || ||| Sbjct 1938705 CCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCGAG 1938764 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | |||| || || ||||| || ||||| |||||||| ||||| || | || Sbjct 1938765 AGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGA 1938824 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || | || || | || | ||||| | ||| || Sbjct 1938825 ATGCCTTCTTTGTCTTGGATCTT-AGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAAC 1938883 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| |||||||| || | ||||| || ||||| ||||| Sbjct 1938884 TTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938931 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||| || || ||| ||||| || ||||| || || ||| Sbjct 1938933 CCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAG 1938992 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | |||| ||||| ||||| || || || |||||||| ||||| || | || Sbjct 1938993 AGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 1939052 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || | || |||| || | ||||| | ||| || Sbjct 1939053 ATGCCTTCTTTGTCTTGGATCTT-AGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAAC 1939111 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| |||||||| || | ||||| |||||||| ||||| Sbjct 1939112 TTCAAGGGTGATAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 1939159 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||| || || ||| ||||| || || ||||||||||| Sbjct 1938477 CCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCGGAA 1938536 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || |||| |||||| ||||| |||||||||||||| ||||| | || Sbjct 1938537 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGATCCGGTGGA 1938596 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || ||||| | | || | || | |||||| | ||| || Sbjct 1938597 ATTCCTTCTTTATCTTGGATTTT-GGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGAC 1938655 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| || | ||||| || ||||| ||||| Sbjct 1938656 TTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328680620517120